Data from: Modeling effects of nonbreeders on population growth estimates

Adult individuals that do not breed in a given year occur in a wide range of natural populations. However, such nonbreeders are often ignored in theoretical and empirical population studies, limiting our knowledge of how nonbreeders affect realized and estimated population dynamics and potentially impeding projection of deterministic and stochastic population growth rates. We present and analyse a general modelling framework for systems where breeders and nonbreeders differ in key demographic rates, incorporating different forms of nonbreeding, different life histories and frequency-dependent effects of nonbreeders on demographic rates of breeders. Comparisons of estimates of deterministic population growth rate, λ, and demographic variance, math formula, from models with and without distinct nonbreeder classes show that models that do not explicitly incorporate nonbreeders give upwardly biased estimates of math formula, particularly when the equilibrium ratio of nonbreeders to breeders, math formula, is high. Estimates of λ from empirical observations of breeders only are substantially inflated when individuals frequently re-enter the breeding population after periods of nonbreeding. Sensitivity analyses of diverse parameterizations of our model framework, with and without negative frequency-dependent effects of nonbreeders on breeder demographic rates, show how changes in demographic rates of breeders vs. nonbreeders differentially affect λ. In particular, λ is most sensitive to nonbreeder parameters in long-lived species, when math formula, and when individuals are unlikely to breed at several consecutive time steps. Our results demonstrate that failing to account for nonbreeders in population studies can obscure low population growth rates that should cause management concern. Quantifying the size and demography of the nonbreeding section of populations and modelling appropriate demographic structuring is therefore essential to evaluate nonbreeders' influence on deterministic and stochastic population dynamics.

R code for constructing and analyzing matrices with nonbreeders: R code to construct and analyze matrices in systems with pre- or post-breeding census, different types of nonbreeders, and with or without negative frequency dependence in breeder survival or fecundity. Analyses include growth rate, stable stage structure, reproductive value, demographic variance, comparison to equivalent Leslie matrix model, sensitivity analysis, effect of only observing breeders, and more.
Lee_Nonbreeder_matrix_analysis_code.R

R code for running sensitivity analyses in systems with nonbreeders: R code for running sensitivity analyses on systems with different types of nonbreeders, with or without negative frequency dependence in breeder survival or reproduction.
Lee_Nonbreeder_sensitivity_analysis_code.R

This work is licensed under a CC0 1.0 Universal (CC0 1.0) Public Domain Dedication license.