Research output per year
Research output per year
- 1 - 50 out of 85 results
Search results
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2023
Effect of feed concentration and residence time on anaerobic fermentation in CSTR and SBR to produce short-chain organic acids
Simonettia, S., Collie-Duguid, E., Fernandez Martin, C., Louis, P., Pu, J., Smith, E. & Dionisi, D., Oct 2023, In: Journal of Environmental Chemical Engineering. 11, 5, 12 p., 110461.Research output: Contribution to journal › Article › peer-review
Open AccessFile2 Downloads (Pure) -
Effect of sampling and storage conditions upon equine fecal microbial community
Ward, A., Harris, P. A., Argo, C. M., Watson, C., Neacsu, M., Russell, W., Ribeiro, A., Collie-Duguid, E., Heidari, Z. & Morrison, P. K., 24 May 2023, Journal of Equine Veterinary Science. Special Issue ed. Vol. 124. 104308Research output: Chapter in Book/Report/Conference proceeding › Published conference contribution
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Taxonomy of fibroblasts and progenitors in the synovial joint at single-cell resolution
Collins, F., Roelofs, A., Symons, R., Kania, K., Campbell, E., Collie-Duguid, E., Riemen, A., Clark, S. & De Bari, C., 10 Feb 2023, In: Annals of the Rheumatic Diseases. 82, 3, p. 428-437 10 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile14 Citations (Scopus)2 Downloads (Pure) -
2022
Comparison of microbial signatures between paired faecal and rectal biopsy samples from healthy volunteers using next-generation sequencing and culturomics
Mukhopadhya, I., Martin, J. C., Shaw, S., McKinley, A. J., Gratz, S. W. & Scott, K. P., 14 Oct 2022, In: Microbiome. 10, 1, 17 p., 171.Research output: Contribution to journal › Article › peer-review
Open AccessFile6 Citations (Scopus)5 Downloads (Pure) -
A novel, essential trans-splicing protein connects the nematode SL1 snRNP to the CBC-ARS2 complex
Fasimoye, R. Y., Spencer, R. E., Soto Martin, E., Eijlers, P., Elmassoudi, H., Brivio, S., Mangana, C., Sabele, V., Rechtorikova, R., Wenzel, M., Connolly, B., Pettitt, J. & Müller, B. M., 22 Jul 2022, In: Nucleic Acids Research. 50, 13, p. 7591-7607 17 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile3 Downloads (Pure) -
SWI/SNF and the histone chaperone Rtt106 drive expression of the Pleiotropic Drug Resistance network genes
Nikolov, V., Malavia, D. & Kubota, T., 12 Apr 2022, In: Nature Communications. 13, 16 p., 1968.Research output: Contribution to journal › Article › peer-review
Open AccessFile2 Citations (Scopus)4 Downloads (Pure) -
Changes in the gut microbiota of Nigerian infants within the first year of life
Oyedemi, O. T., Shaw, S., Martin, J., Ayeni, F. A. & Scott, K., 17 Mar 2022, In: PloS ONE. 17, 3, 18 p., e0265123.Research output: Contribution to journal › Article › peer-review
Open AccessFile11 Citations (Scopus)4 Downloads (Pure) -
Gut mucosal microbiome signatures of colorectal cancer differ according to BMI status
Shaw, S., Berry, S., Thomson, J., Murray, G., El-Omar, E. & Hold, G., 8 Feb 2022, In: Frontiers in Medicine. 8, 13 p., 800566.Research output: Contribution to journal › Article › peer-review
Open AccessFile5 Citations (Scopus)5 Downloads (Pure) -
Distribution, organization and expression of genes concerned with anaerobic lactate utilization in human intestinal bacteria
Sheridan, P., Louis, P., Tsompanidou, E., Shaw, S., Harmsen, H. J. M., Duncan, S., Flint, H. J. & Walker, A., Jan 2022, In: Microbial Genomics. 8, 1, 18 p., 000739.Research output: Contribution to journal › Article › peer-review
Open AccessFile15 Citations (Scopus) -
2021
A Temporally Dynamic Gut Microbiome in Atlantic Salmon During Freshwater Recirculating Aquaculture System (RAS) Production and Post-seawater Transfer
Lorgen-Ritchie, M., Clarkson, M., Chalmers, L., Taylor, J. F., Migaud, H. & Martin, S. A. M., 6 Jul 2021, In: Frontiers in Marine Science. 8, 14 p., 869.Research output: Contribution to journal › Article › peer-review
Open AccessFile21 Citations (Scopus)10 Downloads (Pure) -
Editorial: Curriculum Applications in Microbiology: Bioinformatics in the Classroom
Melendrez, M. C., Shaw, S., Brown, C. T., Goodner, B. W. & Kvaal, C., 1 Jul 2021, In: Frontiers in Microbiology. 12, 5 p., 705233.Research output: Contribution to journal › Editorial › peer-review
Open AccessFile -
A Small-Scale shRNA Screen in Primary Mouse Macrophages Identifies a Role for the Rab GTPase Rab1b in Controlling Salmonella Typhi Growth
Solano-Collado, V., Colamarino, R. A., Calderwood, D. A., Baldassarre, M. & Spanò, S., 7 Apr 2021, In: Frontiers in cellular and infection microbiology. 11, 9 p., 660689.Research output: Contribution to journal › Article › peer-review
Open AccessFile3 Citations (Scopus)5 Downloads (Pure) -
Comparative transcriptomics and host-specific parasite gene expression profiles inform on drivers of proliferative kidney disease
Faber, M., Shaw, S., Yoon, S., De Paiva Alves, E., Wang, B., Qi, Z., Okamura, B., Hartikainen, H., Secombes, C. & Holland, J., 25 Jan 2021, In: Scientific Reports. 11, 17 p., 2149.Research output: Contribution to journal › Article › peer-review
Open AccessFile11 Citations (Scopus)4 Downloads (Pure) -
Imprinting methylation predicts hippocampal volumes and hyperintensities and the change with age in later life
Ritchie, M., Murray, A., Staff, R., Ferguson-Smith, A. C., Richards, M., Horgan, G. W., Phillips, L., Hoad, G., McNeil, C., Ribeiro, A. & Haggarty, P., 13 Jan 2021, In: Scientific Reports. 11, 12 p., 943.Research output: Contribution to journal › Article › peer-review
Open AccessFile7 Citations (Scopus)5 Downloads (Pure) -
Comparative genomics of cetartiodactyla: energy metabolism underpins the transition to an aquatic lifestyle
Derous, D., Sahu, J., Douglas, A., Lusseau, D. & Wenzel, M., 2021, In: Conservation Physiology. 9, 1, 14 p., coaa136.Research output: Contribution to journal › Article › peer-review
Open AccessFile9 Citations (Scopus)2 Downloads (Pure) -
2020
Resolution of polycistronic RNA by SL2 trans-splicing is a widely-conserved nematode trait
Wenzel, M., Johnston, C. S., Müller, B. M., Pettitt, J. & Connolly, B., Dec 2020, In: RNA . 26, 12, p. 1891-1904 14 p.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
Oral bacterial diversity is inversely correlated with mucosal inflammation
Hijazi, K., Morrison, R. W., Mukhopadhya, I., Martin, B., Gemmell, M., Shaw, S. & Santoro, F., Oct 2020, In: Oral Diseases. 26, 7, p. 1566-1575 10 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile23 Citations (Scopus)5 Downloads (Pure) -
Daily Fermented Whey Consumption Alters the Fecal Short-Chain Fatty Acid Profile in Healthy Adults
Smith, N. M., Maloney, N. G., Shaw, S., Horgan, G., Fyfe, C., Martin, J. C., Suter, A., Scott, K. P. & Johnstone, A. M., 30 Sept 2020, In: Frontiers in Nutrition. 7, p. 165 15 p., 165.Research output: Contribution to journal › Article › peer-review
Open AccessFile7 Citations (Scopus)17 Downloads (Pure) -
Dendrimer-coated carbon nanotubes deliver dsRNA and increase the efficacy of gene knockdown in the red flour beetle Tribolium castaneum
Edwards, C. H., Christie, C., Masotti, A., Celluzzi, A., Caporali, A. & Campbell, E. M., 24 Jul 2020, In: Scientific Reports. 10, 11 p., 12422.Research output: Contribution to journal › Article › peer-review
Open AccessFile20 Citations (Scopus)4 Downloads (Pure) -
Foxh1/Nodal Defines Context-Specific Direct Maternal Wnt/β-Catenin Target Gene Regulation in Early Development
Afouda, B. A., Nakamura, Y., Shaw, S., Charney, R. M., Paraiso, K. D., Blitz, I. L., Cho, K. W. Y. & Hoppler, S., 24 Jul 2020, In: iScience. 23, 7, 34 p., 101314.Research output: Contribution to journal › Article › peer-review
Open AccessFile12 Citations (Scopus)7 Downloads (Pure) -
Integration of Transcriptome, Gross Morphology and Histopathology in the Gill of Sea Farmed Atlantic Salmon (Salmo salar): Lessons from Multi-site Sampling
Krol, E., Noguera, P., Shaw, S., Costelloe, E., Gajardo, K., Valdenegro, V., Bickerdike, R., Douglas, A. & Martin, S. A. M., 19 Jun 2020, In: Frontiers in Genetics. 11, 20 p., 610.Research output: Contribution to journal › Article › peer-review
Open AccessFile17 Citations (Scopus)5 Downloads (Pure) -
β-glucan is a major growth substrate for human gut bacteria related to Coprococcus eutactus
Alessi, A. M., Gray, V., Farquharson, F. M., Flores-López, A., Shaw, S., Stead, D., Wegmann, U., Shearman, C., Gasson, M., Collie-Duguid, E. SR., Flint, H. J. & Louis, P., 1 Jun 2020, In: Environmental Microbiology. 22, 6, p. 2150-2164 15 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile20 Citations (Scopus)8 Downloads (Pure) -
Green Bees: Reverse Genetic Analysis of Deformed Wing Virus Transmission, Replication, and Tropism
Gusachenko, O. N., Woodford, L., Balbirnie-Cumming, K., Campbell, E. M., Christie, C. R., Bowman, A. S. & Evans, D. J., May 2020, In: Viruses. 12, 5, 17 p., 532.Research output: Contribution to journal › Article › peer-review
Open AccessFile31 Citations (Scopus)4 Downloads (Pure) -
Diversity and Global Distribution of Viruses of the Western Honey Bee, Apis mellifera
Beaurepaire, A., Piot, N., Doublet, V., Antunez, K., Campbell, E., Chantawannakul, P., Chejanovsky, N., Gajda, A., Heerman, M., Panziera, D., Smagghe, G., Yañez, O., de Miranda, J. R. & Dalmon, A., 10 Apr 2020, In: Insects. 11, 4, 25 p., 239.Research output: Contribution to journal › Article › peer-review
Open AccessFile126 Citations (Scopus)5 Downloads (Pure) -
The molecular aetiology of tRNA synthetase depletion: induction of a GCN4 amino acid starvation response despite homeostatic maintenance of charged tRNA levels
McFarland, M. R., Keller, C. D., Childers, B. M., Adeniyi, S. A., Corrigall, H., Raguin, A., Romano, M. C. & Stansfield, I., 6 Apr 2020, In: Nucleic Acids Research. 48, 6, p. 3071-3088 18 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile7 Citations (Scopus)18 Downloads (Pure) -
Deep evolutionary origin of nematode SL2 trans-splicing revealed by genome-wide analysis of the Trichinella spiralis transcriptome
Wenzel, M., Johnston, C., Müller, B., Pettitt, J. & Connolly, B., 2020, In: bioRxiv.Research output: Contribution to journal › Article
Open Access -
2019
Fetal androgen exposure is a determinant of adult male metabolic health
Siemienowicz, K., Filis, P., Shaw, S., Douglas, A., Thomas, J., Mulroy, S., Howie, F., Fowler, P. A., Duncan, W. C. & Rae, M. T., 27 Dec 2019, In: Scientific Reports. 9, 20195.Research output: Contribution to journal › Article › peer-review
Open AccessFile17 Citations (Scopus)3 Downloads (Pure) -
ABC Transporter Genes Show Upregulated Expression in Drug Resistant Clinical Isolates of Candida auris: a Genome-Wide Characterization of ATP-Binding Cassette (ABC) Transporter Genes
Wasi, M., Khandelwal, N. K., Moorhouse, A. J., Nair, R., Vishwakarma, P., Ruiz, G. B., Ross, Z. K., Lorenz, A., Rudramurthy, S. M., Chakrabarti, A., Lynn, A. M., Mondal, A. K., Gow, N. A. R. & Prasad, R., 16 Jul 2019, In: Frontiers in Microbiology. 10, 16 p., 1445.Research output: Contribution to journal › Article › peer-review
Open AccessFile51 Citations (Scopus)5 Downloads (Pure) -
VGLL3 operates via TEAD1, TEAD3 and TEAD4 to influence myogenesis in skeletal muscle
Figeac, N., Mohamed, A. D., Sun, C., Schönfelder, M., Matallanas, D., Garcia-Munoz, A., Missiaglia, E., Collie-Duguid, E., De Mello, V., Pobbati, A. V., Pruller, J., Jaka, O., Harridge, S. D. R., Hong, W., Shipley, J., Vargesson, N., Zammit, P. S. & Wackerhage, H., 5 Jul 2019, In: Journal of Cell Science. 132, jcs225946 .Research output: Contribution to journal › Article › peer-review
Open AccessFile48 Citations (Scopus)12 Downloads (Pure) -
QTL-seq reveals a major root-knot nematode resistance locus on chromosome 11 in rice (Oryza sativa L.)
Lahari, Z., Ribeiro, A., Talukdar, P., Martin, B., Heidari, Z., Gheysen, G., Price, A. H. & Shrestha, R., 1 Jul 2019, In: Euphytica. 215, 117.Research output: Contribution to journal › Article › peer-review
Open AccessFile21 Citations (Scopus)9 Downloads (Pure) -
Discovery of all three types in cartilaginous fishes enables phylogenetic resolution of the origins and evolution of interferons
Redmond, A. K., Zou, J., Secombes, C. J., MacQueen, D. J. & Dooley, H., Jul 2019, In: Frontiers in Immunology. 10, 16 p., 1558.Research output: Contribution to journal › Article › peer-review
Open AccessFile51 Citations (Scopus)5 Downloads (Pure) -
Nationwide Stepwise Emergence and Evolution of Multidrug-Resistant Campylobacter jejuni Sequence Type 5136, United Kingdom
Lopes, B. S., Strachan, N. J. C., Ramjee, M., Thomson, A. P., MacRae, M., Shaw, S. & Forbes, K. J., Jul 2019, In: Emerging Infectious Diseases. 25, 7, p. 1320-1329 10 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile16 Citations (Scopus)5 Downloads (Pure) -
Pressure and temperature effects on deep‐sea hydrocarbon‐degrading microbial communities in subarctic sediments
Perez Calderon, L. J., Gontikaki, E., Potts, L. D., Shaw, S., Gallego, A., Anderson, J. A. & Witte, U., Jun 2019, In: MicrobiologyOpen. 8, 6, 11 p., e00768.Research output: Contribution to journal › Article › peer-review
Open AccessFile23 Citations (Scopus)9 Downloads (Pure) -
Maternal Smoking during Pregnancy and Changes in Prostaglandin Enzymes in the Human Fetus.
Zafeiri, A., Filis, P., Shaw, S., Iredale, J. P., Swortwood, M. J., Mitchell, R. T., Hay, D. C., O'Shaughnessy, P. J. & Fowler, P. A., 1 Mar 2019, In: Reproductive Sciences. 26, Supplement 1, p. 244A-244A 1 p., F-103.Research output: Contribution to journal › Abstract › peer-review
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Inhibition of Classical and Alternative Modes of Respiration in Candida albicans Leads to Cell Wall Remodeling and Increased Macrophage Recognition
Duvenage, L., Walker, L. A., Bojarczuk, A., Johnston, S. A., MacCallum, D. M., Munro, C. A. & Gourlay, C. W., 29 Jan 2019, In: mBio. 10, 1, e02535-18.Research output: Contribution to journal › Article › peer-review
Open AccessFile42 Citations (Scopus)8 Downloads (Pure) -
Formate cross-feeding and cooperative metabolic interactions revealed by transcriptomics in co-cultures of acetogenic and amylolytic human colonic bacteria
Laverde Gomez, J. A., Mukhopadhya, I., Duncan, S. H., Louis, P., Shaw, S., Collie-Duguid, E., Crost, E., Juge, N. & Flint, H. J., Jan 2019, In: Environmental Microbiology. 21, 1, p. 259-271 13 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile49 Citations (Scopus)11 Downloads (Pure) -
Adaptations of energy metabolism in cetaceans have consequences for their response to foraging disruption
Derous, D., Sahu, J., Douglas, A., Lusseau, D. & Wenzel, M., 2019, bioRxiv.Research output: Working paper › Preprint
Open Access -
Comparative genomics and genome biology of Campylobacter showae
Hsu, T., Gemmell, M. R., Franzosa, E. A., Berry, S. H., Mukhopadhya, I., Hansen, R., Michaud, M., Nielsen, H., Miller, W. G., Nielsen, H., Bajaj-Elliott, M., Huttenhower, C., Garrett, W. S. & Hold, G. L., 2019, In: Emerging Microbes and Infections. 8, 1, p. 827-840 14 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile6 Citations (Scopus)7 Downloads (Pure) -
Domestication of Campylobacter jejuni NCTC 11168
Pascoe, B., Williams, L. K., Calland, J. K., Meric, G., Hitchings, M. D., Dyer, M., Ryder, J., Shaw, S., Lopes, B. S., Chintoan-Uta, C., Allan, E., Vidal, A., Fearnley, C., Everest, P., Pachebat, J. A., Cogan, T. A., Stevens, M. P., Humphrey, T. J., Wilkinson, T. S., Cody, A. J., & 12 others, 2019, In: Microbial Genomics. 5, 7, 279.Research output: Contribution to journal › Article › peer-review
Open AccessFile23 Citations (Scopus)18 Downloads (Pure) -
2018
Phylotranscriptomics suggests the jawed vertebrate ancestor could generate diverse helper and regulatory T cell subsets
Redmond, A. K., Macqueen, D. J. & Dooley, H., 15 Nov 2018, In: BMC Evolutionary Biology. 18, 169.Research output: Contribution to journal › Article › peer-review
Open AccessFile20 Citations (Scopus)7 Downloads (Pure) -
RNA interference in the cat flea, Ctenocephalides felis: Approaches for sustained gene knockdown and evidence of involvement of Dicer-2 and Argonaute2
Edwards, C. H., Baird, J., Zinser, E., Woods, D. J., Shaw, S., Campbell, E. M. & Bowman, A. S., Nov 2018, In: International Journal for Parasitology. 48, 13, p. 993-1002 10 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile6 Citations (Scopus)11 Downloads (Pure) -
Diet induced obesity is independent of metabolic endotoxemia and TLR4 signalling, but markedly increases hypothalamic expression of the acute phase protein, SerpinA3N
Dalby, M. J., Aviello, G., Ross, A. W., Walker, A. W., Barrett, P. & Morgan, P. J., 23 Oct 2018, In: Scientific Reports. 8, 15 p., 15648.Research output: Contribution to journal › Article › peer-review
Open AccessFile48 Citations (Scopus)9 Downloads (Pure) -
Haptoglobin Is a Divergent MASP Family Member That Neofunctionalized To Recycle Hemoglobin via CD163 in Mammals
Redmond, A. K., Ohta, Y., Criscitiello, M. F., Macqueen, D. J., Flajnik, M. F. & Dooley, H., 15 Oct 2018, In: The Journal of Immunology. 201, 8, p. 2483-2491 9 p.Research output: Contribution to journal › Article › peer-review
14 Citations (Scopus) -
Novel Campylobacter concisus lipooligosaccharide is a determinant of inflammatory potential and virulence
Brunner, K., John, C. M., Phillips, N. J., Alber, D. G., Gemmell, M. R., Hansen, R., Nielsen, H. L., Hold, G. L., Bajaj-Elliott, M. & Jarvis, G. A., Oct 2018, In: Journal of Lipid Research. 59, 10, p. 1893-1905 13 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile2 Citations (Scopus) -
Genome Wide Association mapping of grain and straw biomass traits in the rice Bengal and Assam Aus Panel (BAAP) grown under alternate wetting and drying and permanently flooded irrigation
Norton, G. J., Travis, A. J., Douglas, A., Fairley, S., De Paiva Alves, E., Ruang-areerate, P., Naredo, E., McNally, K. L., Hossain, M., Islam, R. & Price, A. H., 3 Sept 2018, In: Frontiers in plant science. 9, 18 p., 1223.Research output: Contribution to journal › Article › peer-review
Open AccessFile32 Citations (Scopus)21 Downloads (Pure) -
Budding yeast Rif1 binds to replication origins and protects DNA at blocked replication forks
Hiraga, S., Monerawela, C., Katou, Y., Shaw, S., Clark, K. R. M., Shirahige, K. & Donaldson, A. D., 1 Sept 2018, In: EMBO reports. 19, 9, 16 p., e46222.Research output: Contribution to journal › Article › peer-review
Open AccessFile23 Citations (Scopus)10 Downloads (Pure) -
Microbiome composition within a sympatric species complex of intertidal isopods (Jaera albifrons)
Wenzel, M. A., Douglas, A. & Piertney, S. B., 29 Aug 2018, In: PloS ONE. 13, 8, e0202212.Research output: Contribution to journal › Article › peer-review
Open AccessFile12 Citations (Scopus)9 Downloads (Pure) -
The Effect of Vitamin D on Intestinal Inflammation and Faecal Microbiota in Patients with Ulcerative Colitis
Garg, M., Hendy, P., Ding, J. N., Shaw, S., Hold, G. & Hart, A., Aug 2018, In: Journal of Crohn's and Colitis. 12, 8, p. 963-972 10 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile83 Citations (Scopus)21 Downloads (Pure) -
Adaptive response of neonatal sepsis-derived Group B Streptococcus to bilirubin
Hansen, R., Gibson, S., De Paiva Alves, E., Goddard, M., MacLaren, A., Karcher, A. M., Berry, S., Collie-Duguid, E. S. R., El-Omar, E., Munro, M. & Hold, G. L., 24 Apr 2018, In: Scientific Reports. 8, p. 1-10 10 p., 6470.Research output: Contribution to journal › Article › peer-review
Open AccessFile19 Citations (Scopus)16 Downloads (Pure) -
Genome-wide transcriptomics analysis of genes regulated by GATA4, 5 and 6 during cardiomyogenesis in Xenopus laevis
Afouda, B. A., Lynch, A. T., De Paiva Alves, E. & Hoppler, S., Apr 2018, In: Data in brief. 17, p. 559-563 5 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile2 Citations (Scopus)12 Downloads (Pure)