Alessandro de Moura

2017

Gene length as a regulator for ribosome recruitment and protein synthesis: theoretical insights

Fernandes, L. D., Moura, A. P. S. D. & Ciandrini, L., 12 Dec 2017, In: Scientific Reports. 7, 17409.

Research output: Contribution to journal › Article › peer-review

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37 Citations (Scopus)

11 Downloads (Pure)

Cooperative response and clustering: Consequences of membrane-mediated interactions among mechanosensitive channels

Fernandes, L. D., Guseva, K. & De Moura, A. P. S., 21 Aug 2017, In: Physical Review E. 96, 2, 022410.

Research output: Contribution to journal › Article › peer-review

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1 Citation (Scopus)

14 Downloads (Pure)

Frontiers of chaotic advection

Aref, H., Blake, J. R., Budišić, M., Cardoso, S. S. S., Cartwright, J. H. E., Clercx, H. J. H., El Omari, K., Feudel, U., Golestanian, R., Gouillart, E., Van Heijst, G. F., Krasnopolskaya, T. S., Le Guer, Y., MacKay, R. S., Meleshko, V. V., Metcalfe, G., Mezić, I., De Moura, A. P. S., Piro, O., Speetjens, M. F. M., & 3 othersSturman, R., Thiffeault, J. L. & Tuval, I., 14 Jun 2017, In: Reviews of Modern Physics. 89, 2, 66 p., 025007.

Research output: Contribution to journal › Article › peer-review

143 Citations (Scopus)

Brief isoflurane anaesthesia affects differential gene expression, gene ontology and gene networks in rat brain

Lowes, D. A., Galley, H. F., Moura, A. P. S. & Webster, N. R., 15 Jan 2017, In: Behavioural Brain Research. 317, p. 453-460 8 p.

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9 Citations (Scopus)

48 Downloads (Pure)

2015

Oxygen-Driven Tumour Growth Model: A Pathology-Relevant Mathematical Approach

Delgado-SanMartin, J. A., Hare, J. I., de Moura, A. P. S., Yates, J. W. T. & Wang, E. (ed.), 30 Oct 2015, In: PLoS Computational Biology . 11, 10, e1004550.

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6 Citations (Scopus)

7 Downloads (Pure)

Integrative Model of Oxidative Stress Adaptation in the Fungal Pathogen Candida albicans

Chandrasekaran, K., Kaloriti, D., Tillmann, A. T., Yin, Z., Herrero De Dios, C., Jacobsen, M. D., Belmonte, R. C., Cameron, G., Haynes, K., Grebogi, C., de Moura, A. P. S., Gow, N. A. R., Thiel, M., Quinn, J., Brown, A. J. P. & Romano, M. C., 14 Sept 2015, In: PloS ONE. 10, 9, 0137750.

Research output: Contribution to journal › Article › peer-review

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53 Citations (Scopus)

12 Downloads (Pure)

2014

Diffusion in randomly perturbed dissipative dynamics

Rodrigues, C. S., Chechkin, A. V., Moura, A. P. S. D., Grebogi, C. & Klages, R., 12 Nov 2014, In: Europhysics Letters. 108, 4, 40002.

Research output: Contribution to journal › Article › peer-review

5 Citations (Scopus)

Strange eigenmodes and chaotic advection in open fluid flows

De Moura, A. P. S., 7 May 2014, In: Europhysics Letters. 106, 3, 6 p., 34002.

Research output: Contribution to journal › Article › peer-review

3 Citations (Scopus)

The dynamics of genome replication using deep sequencing

Müller, C. A., Hawkins, M., Retkute, R., Malla, S., Wilson, R., Blythe, M. J., Nakato, R., Komata, M., Shirahige, K., de Moura, A. P. S. & Nieduszynski, C. A., Jan 2014, In: Nucleic Acids Research. 42, 1, e3.

Research output: Contribution to journal › Article › peer-review

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84 Citations (Scopus)

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Dynamical Collapse of Trajectories Part I: Homoclinic Tangles in Systems with Dry Friction

Biemond, J. J. B., de Moura, A. P. S., Grebogi, C., van de Wouw, N. & Nijmeijer, H., 2014, Proceedings of the 8th European Nonlinear Dynamics Conference (ENOC 2014). Vienna University of Technology, 2 p. 345

Research output: Chapter in Book/Report/Conference proceeding › Published conference contribution

Dynamical Collapse of Trajectories Part II: Limit Set of a Horseshoe-like Map

Biemond, J. J. B., Moura, A. P. S., Grebogi, C., van de Wouw, N. & Nijmeijer, H., 2014, Proceedings of the 8th European Nonlinear Dynamics Conference (ENOC 2014). Vienna University of Technology, 2 p. 298

Research output: Chapter in Book/Report/Conference proceeding › Published conference contribution

The role of asymmetries in rock-paper-scissors biodiversity models

Timpanaro, A. M., Grebogi, C. & de Moura, A. P. S., 2014. 1 p.

Research output: Contribution to conference › Abstract › peer-review

Open Access

2013

High-Resolution Replication Profiles Define the Stochastic Nature of Genome Replication Initiation and Termination

Hawkins, M., Retkute, R., Müller, C. A., Saner, N., Tanaka, T. U., de Moura, A. P. S. & Nieduszynski, C. A., Nov 2013, In: Cell Reports. 5, 4, p. 1132-1141 10 p.

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55 Citations (Scopus)

14 Downloads (Pure)

Stochastic association of neighboring replicons creates replication factories in budding yeast

Saner, N., Karschau, J., Natsume, T., Gierlinski, M., Retkute, R., Hawkins, M., Nieduszynski, C. A., Blow, J. J., de Moura, A. P. S. & Tanaka, T. U., 30 Sept 2013, In: Journal of Cell Biology. 202, 7, p. 1001-1012 12 p.

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42 Citations (Scopus)

6 Downloads (Pure)

Integrated stress response of Escherichia coli to methylglyoxal: transcriptional readthrough from the nemRA operon enhances protection through increased expression of glyoxalase I

Ozyamak, E., de Almeida, C., de Moura, A. P. S., Miller, S. & Booth, I. R., Jun 2013, In: Molecular Microbiology. 88, 5, p. 936-950 15 p.

Research output: Contribution to journal › Article › peer-review

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29 Citations (Scopus)

10 Downloads (Pure)

Effects of bounded random perturbations on discrete dynamical systems

Rodrigues, C. S., de Moura, A. P. S. & Grebogi, C., 2013, Bounded noises in physics, biology and engineering. d'Onofrio, A. (ed.). New York: Birkhäuser, p. 151-168 17 p. (Modeling and Simulation in Science, Engineering and Technology).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2012

Combinatorial stresses kill pathogenic Candida species

Kaloriti, D., Tillmann, A., Cook, E., Jacobsen, M., You, T., Lenardon, M., Ames, L., Barahona, M., Chandrasekaran, K., Coghill, G., Goodman, D., Gow, N. A. R., Grebogi, C., Ho, H-L., Ingram, P., McDonagh, A., de Moura, A. P. S., Pang, W., Puttnam, M., Radmaneshfar, E., & 10 othersRomano, M. C., Silk, D., Stark, J., Stumpf, M., Thiel, M., Thorne, T., Usher, J., Yin, Z., Haynes, K. & Brown, A. J. P., Oct 2012, In: Medical Mycology. 50, 7, p. 699-709 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

73 Citations (Scopus)

Impact of combinatorial stresses upon Candida albicans

Kaloriti, D., Tillmann, A., Jacobsen, M., Yin, Z., Patterson, M., Radmaneshfar, E., You, T., Chandrasekaran, K., Pang, W., Coghill, G., de Moura, A. P. S., Thiel, M., Romano, M. C., Grebogi, C., Haynes, K., Quinn, J., Gow, N. A. R. & Brown, A. J. P., Jun 2012, In: Mycoses. 55, Suppl. 4, p. 15 1 p.

Research output: Contribution to journal › Abstract › peer-review

A systems biology analysis of long and short-term memories of osmotic stress adaptation in fungi

You, T., Ingram, P., Jacobsen, M. D., Cook, E., McDonagh, A., Thorne, T., Lenardon, M. D., de Moura, A. P. S., Romano, M. C., Thiel, M., Stumpf, M., Gow, N. A. R., Haynes, K., Grebogi, C., Stark, J. & Brown, A. J. P., 25 May 2012, In: BMC Research Notes. 5, 16 p., 258.

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27 Citations (Scopus)

14 Downloads (Pure)

Dynamical collapse of trajectories

Biemond, J. J. B., de Moura, A. P. S., Grebogi, C., van de Wouw, N. & Nijmeijer, H., Apr 2012, In: Europhysics Letters. 98, 2, 5 p., 20001.

Research output: Contribution to journal › Article › peer-review

2 Citations (Scopus)

Are the fractal skeletons the explanation for the narrowing of arteries due to cell trapping in a disturbed blood flow?

Schelin, A. B., Karolyi, G., de Moura, A. P. S., Booth, N. & Grebogi, C., Mar 2012, In: Computers in Biology and Medicine. 42, 3, p. 276-281 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

12 Citations (Scopus)

Optimal placement of origins for DNA replication

Karschau, J., Blow, J. J. & de Moura, A. P. S., 3 Feb 2012, In: Physical Review Letters. 108, 5, 5 p., 058101.

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15 Citations (Scopus)

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Optimality in DNA repair

Richard, M. C., Fryett, M., Miller, S., Booth, I., Grebogi, C. & Moura, A., 7 Jan 2012, In: Journal of Theoretical Biology. 292, p. 39-43 5 p.

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2 Citations (Scopus)

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Mixing and Chaos in Open Flows

de Moura, A. P. S., Feudel, U. & Gouillart, E., 2012, Advances in Applied Mechanics. van der Giessen, E., Aref, H., Clercx, H. & Speetjens, M. (eds.). Elsevier, Vol. 45. p. 1-50 50 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

7 Citations (Scopus)

2011

Reacting particles in open chaotic flows

de Moura, A. P. S., 30 Dec 2011, In: Physical Review Letters. 107, 27, 5 p., 274501.

Research output: Contribution to journal › Article › peer-review

4 Citations (Scopus)

Nonlinear dynamics: a brief introduction

de Moura, A. P. S. & Grebogi, C., 12 Sept 2011, Handbook of Statistical Systems Biology. Stumpf, M., Girolami, M. & Balding, D. (eds.). Wiley-Blackwell , p. 331-338

Research output: Chapter in Book/Report/Conference proceeding › Chapter

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Dynamics of DNA replication in yeast

Retkute, R., Nieduszynski, C. & de Moura, A., 5 Aug 2011, In: Physical Review Letters. 107, 6, 4 p., 068103.

Research output: Contribution to journal › Article › peer-review

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28 Citations (Scopus)

8 Downloads (Pure)

A matter of life or death: modeling DNA damage and repair in bacteria

Karschau, J., de Almeida, C., Richard, M. C., Miller, S., Booth, I. R., Grebogi, C. & de Moura, A. P. S., 16 Feb 2011, In: Biophysical Journal. 100, 4, p. 814-821 8 p.

Research output: Contribution to journal › Article › peer-review

12 Citations (Scopus)

Collective response of self-organized clusters of mechanosensitive channels

Guseva, K., Thiel, M., Miller, S., Grebogi, C., de Moura, A. P. S. & Booth, I., 2011, In: Physical Review. E, Statistical, Nonlinear and Soft Matter Physics. 83, 2, 4 p., 020901(R).

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5 Citations (Scopus)

11 Downloads (Pure)

Dynamics: A Brief Introduction

Moura, A. & Grebogi, C., 2011, Handbook of Statistical Systems Biology. Stumpf, M., Balding, D. J. & Girolami, M. (eds.). Wiley

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2010

Fractal structures in stenoses and aneurysms in blood vessels

Schelin, A. B., Karolyi, G., de Moura, A. P. S., Booth, N. A. & Grebogi, C., 28 Dec 2010, In: Philosophical Transactions of the Royal Society A: Mathematical, Physical & Engineering Sciences. 368, 1933, p. 5605-5617 13 p.

Research output: Contribution to journal › Article › peer-review

16 Citations (Scopus)

Introduction to Focus Issue: Dynamics in Systems Biology

Brackley, C. A., Ebenhoeh, O., Grebogi, C., Kurths, J., de Moura, A., Romano, M. C. & Thiel, M., Dec 2010, In: Chaos. 20, 4, 3 p., 045101.

Research output: Contribution to journal › Article › peer-review

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12 Citations (Scopus)

11 Downloads (Pure)

Escape from attracting sets in randomly perturbed systems

Rodrigues, C. S., Grebogi, C. & de Moura, A. P. S., 20 Oct 2010, In: Physical Review. E, Statistical, Nonlinear and Soft Matter Physics. 82, 4, 5 p., 046217.

Research output: Contribution to journal › Article › peer-review

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15 Citations (Scopus)

8 Downloads (Pure)

Mathematical modelling of whole chromosome replication

de Moura, A. P. S., Retkute, R., Hawkins, M. & Nieduszynski, C. A., Sept 2010, In: Nucleic Acids Research. 38, 17, p. 5623-5633 11 p.

Research output: Contribution to journal › Article › peer-review

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70 Citations (Scopus)

7 Downloads (Pure)

Random fluctuation leads to forbidden escape of particles

Rodrigues, C., de Moura, A. P. S. & Grebogi, C., 27 Aug 2010, In: Physical Review. E, Statistical, Nonlinear and Soft Matter Physics. 82, 2, 6 p., 026211.

Research output: Contribution to journal › Article › peer-review

17 Citations (Scopus)

Global and local depletion of ternary complex limits translational elongation

Zhang, G., Fedyunin, I., Miekley, O., Valleriani, A., de Moura, A. P. S. & Ignatova, Z., 14 Aug 2010, In: Nucleic Acids Research. 38, 14, p. 4778-4787 10 p.

Research output: Contribution to journal › Article › peer-review

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64 Citations (Scopus)

7 Downloads (Pure)

Nonlinear Dynamics and Chaos: Advances and Perspectives

Thiel, M. (ed.), Kurths, J. (ed.), Romano, M. C. (ed.), Karolyi, G. (ed.) & de Moura, A. P. S. (ed.), 22 May 2010, Dordrecht, Netherlands: Springer-Verlag. 293 p. (Understanding Complex Systems)

Research output: Book/Report › Book

Dynamics of finite-size particles in chaotic fluid flows

Cartwright, J. H. E., Feudel, U., Karolyi, G., de Moura, A. P. S., Piro, O. & Tel, T., 2010, Nonlinear Dynamics and Chaos: Advances and Perspectives. London: Springer , p. 51-89 39 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

60 Citations (Scopus)

2009