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Research Output

2020

The molecular aetiology of tRNA synthetase depletion: induction of a GCN4 amino acid starvation response despite homeostatic maintenance of charged tRNA levels

McFarland, M. R., Keller, C. D., Childers, B. M., Adeniyi, S. A., Corrigall, H., Raguin, A., Romano, M. C. & Stansfield, I., 6 Apr 2020, In : Nucleic Acids Research. 48, 6, p. 3071-3088 18 p.

Research output: Contribution to journalArticle

Open Access
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5 Downloads (Pure)
2019

Definition Of The Minimal Contents For The Molecular Simulation Of The Yeast Cytoplasm

Kompella, V. P. S., Stansfield, I., Romano, M. C. & Mancera, R. L., Oct 2019, In : Frontiers in Molecular Biosciences. 6, 9 p., 97.

Research output: Contribution to journalArticle

Open Access
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2 Downloads (Pure)

Translational control of gene expression via interacting feedback loops

Wang, L., Romano, M. C. & Davidson, F. A., 26 Nov 2019, In : Physical Review. E, Statistical, Nonlinear and Soft Matter Physics. 100, 5, 6 p., 050402(R).

Research output: Contribution to journalArticle

Open Access
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1 Downloads (Pure)
2018

Deciphering mRNA Sequence Determinants of Protein Production Rate

Szavits-Nossan, J., Ciandrini, L. & Romano, M. C., 23 Mar 2018, In : Physical Review Letters. 120, 12, 128101.

Research output: Contribution to journalArticle

Open Access
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8 Citations (Scopus)
5 Downloads (Pure)

Power series solution of the inhomogeneous exclusion process

Szavits-Nossan, J., Romano, M. C. & Ciandrini, L., 29 May 2018, In : Physical Review. E, Statistical, Nonlinear and Soft Matter Physics. 97, 5, 13 p., 052139.

Research output: Contribution to journalArticle

Open Access
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4 Citations (Scopus)
5 Downloads (Pure)
2017

Novel mRNA-specific effects of ribosome drop-off on translation rate and polysome profile

Bonnin, P., Kern, N., Young, N. T., Stansfield, I. & Romano, M. C., May 2017, In : PLoS Computational Biology . 13, 5, e1005555.

Research output: Contribution to journalArticle

Open Access
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8 Citations (Scopus)
7 Downloads (Pure)
2016

Identification of the mRNA targets of tRNA-specific regulation using genome-wide simulation of translation

Gorgoni, B., Ciandrini, L., McFarland, M. R., Romano, M. C. & Stansfield, I., 2 Nov 2016, In : Nucleic Acids Research. 44, 19, p. 9231-9244 14 p.

Research output: Contribution to journalArticle

Open Access
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8 Citations (Scopus)
9 Downloads (Pure)

Synthetic biology routes to bio-artificial intelligence

Nesbeth, D. N., Zaikin, A., Saka, Y., Romano, M. C., Giuraniuc, C. V., Kanakov, O. & Laptyeva, T., 30 Nov 2016, In : Essays in Biochemistry. 60, 4, p. 381-391 11 p.

Research output: Contribution to journalArticle

Open Access
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7 Citations (Scopus)
8 Downloads (Pure)
2015

Integrative Model of Oxidative Stress Adaptation in the Fungal Pathogen Candida albicans

Chandrasekaran, K., Kaloriti, D., Tillmann, A. T., Yin, Z., Herrero De Dios, C., Jacobsen, M. D., Belmonte, R. C., Cameron, G., Haynes, K., Grebogi, C., de Moura, A. P. S., Gow, N. A. R., Thiel, M., Quinn, J., Brown, A. J. P. & Romano, M. C., 14 Sep 2015, In : PloS ONE. 10, 9, 0137750.

Research output: Contribution to journalArticle

Open Access
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23 Citations (Scopus)
8 Downloads (Pure)
2014

Controlling translation elongation efficiency: tRNA regulation of ribosome flux on the mRNA

Gorgoni, B., Marshall, E., McFarland, M. R., Romano, M. C. & Stansfield, I., Feb 2014, In : Biochemical Society Transactions. 42, 1, p. 160-165 6 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Dominant-negative release factors and their effect on termination and translational recoding events

McFarland, M. R., Romano, M. C. & Stansfield, I., 25 Jan 2014, (Unpublished).

Research output: Contribution to conferencePoster

Identifying coupling directions by recurrences

Zou, Y., Romano, M. C., Thiel, M. & Kurths, J., 12 Aug 2014, Recurrence Quantification Analysis: Theory and Best Practices - Part I. Webber Jr, C. L. & Marwan, N. (eds.). Springer-Verlag, p. 65-99 35 p. (Understanding Complex Systems).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)

Minimal model of transcriptional elongation processes with pauses

Wang, J., Pfeuty, B., Thommen, Q., Romano Blasco, M. C. & Lefranc, M., 11 Nov 2014, In : Physical Review. E, Statistical, Nonlinear and Soft Matter Physics. 90, 5, p. 1-4 4 p., 050701.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Ribosome recycling induces optimal translation rate at low ribosomal availability

Marshall, E., Stansfield, I. & Romano, M. C., 6 Sep 2014, In : Journal of the Royal Society Interface. 11, 98, 9 p., 20140589 .

Research output: Contribution to journalArticle

Open Access
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16 Citations (Scopus)
5 Downloads (Pure)

Stepping and Crowding of Molecular Motors: Statistical Kinetics from an Exclusion Process Perspective

Ciandrini, L., Romano, M. C. & Parmeggiani, A., 2 Sep 2014, In : Biophysical Journal. 107, 5, p. 1176-1184 9 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)
2013

A yeast tRNA mutant that causes pseudohyphal growth exhibits reduced rates of CAG codon translation

Kemp, A., Betney, R., Ciandrini, L., Schwenger, A. C., Romano, M. C. & Stansfield, I., Jan 2013, In : Molecular Microbiology. 87, 2, p. 284–300 27 p.

Research output: Contribution to journalArticle

25 Citations (Scopus)

Dominant-negative release factors and their effect on termination and translational recoding events

McFarland, M. R., Romano, M. C. & Stansfield, I., 4 Jul 2013, (Unpublished).

Research output: Contribution to conferencePoster

From START to FINISH: the influence of osmotic stress on the cell cycle

Radmaneshfar, E., Kaloriti, D., Gustin, M. C., Gow, N. A. R., Brown, A. J. P., Grebogi, C., Romano, M. C. & Thiel, M., 10 Jul 2013, In : PloS ONE. 8, 7, 14 p., e68067.

Research output: Contribution to journalArticle

Open Access
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11 Citations (Scopus)
6 Downloads (Pure)
Open Access
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61 Citations (Scopus)
6 Downloads (Pure)

The wiper model: avalanche dynamics in an exclusion process

Politi, A. & Romano, M. C., Oct 2013, In : Journal of statistical mechanics-Theory and experiment. 2013, 18 p., 10015.

Research output: Contribution to journalArticle

Transport on a lattice with dynamical defects

Turci, F., Parmeggiani, A., Pitard, E., Romano, M. C. & Ciandrini, L., 2013, In : Physical Review. E, Statistical, Nonlinear and Soft Matter Physics. 87, 1, 8 p., 012705.

Research output: Contribution to journalArticle

17 Citations (Scopus)
2012

A max-plus model of ribosome dynamics during mRNA translation

Brackley, C. A., Broomhead, D. S., Romano, M. C. & Thiel, M., 21 Jun 2012, In : Journal of Theoretical Biology. 303, -, p. 128-140 13 p.

Research output: Contribution to journalArticle

26 Citations (Scopus)

A systems biology analysis of long and short-term memories of osmotic stress adaptation in fungi

You, T., Ingram, P., Jacobsen, M. D., Cook, E., McDonagh, A., Thorne, T., Lenardon, M. D., de Moura, A. P. S., Romano, M. C., Thiel, M., Stumpf, M., Gow, N. A. R., Haynes, K., Grebogi, C., Stark, J. & Brown, A. J. P., 25 May 2012, In : BMC Research Notes. 5, 16 p., 258.

Research output: Contribution to journalArticle

Open Access
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18 Citations (Scopus)
9 Downloads (Pure)

Combinatorial stresses kill pathogenic Candida species

Kaloriti, D., Tillmann, A., Cook, E., Jacobsen, M., You, T., Lenardon, M., Ames, L., Barahona, M., Chandrasekaran, K., Coghill, G., Goodman, D., Gow, N. A. R., Grebogi, C., Ho, H-L., Ingram, P., McDonagh, A., de Moura, A. P. S., Pang, W., Puttnam, M., Radmaneshfar, E. & 10 others, Romano, M. C., Silk, D., Stark, J., Stumpf, M., Thiel, M., Thorne, T., Usher, J., Yin, Z., Haynes, K. & Brown, A. J. P., Oct 2012, In : Medical Mycology. 50, 7, p. 699-709 11 p.

Research output: Contribution to journalArticle

55 Citations (Scopus)

Impact of combinatorial stresses upon Candida albicans

Kaloriti, D., Tillmann, A., Jacobsen, M., Yin, Z., Patterson, M., Radmaneshfar, E., You, T., Chandrasekaran, K., Pang, W., Coghill, G., de Moura, A. P. S., Thiel, M., Romano, M. C., Grebogi, C., Haynes, K., Quinn, J., Gow, N. A. R. & Brown, A. J. P., Jun 2012, In : Mycoses. 55, Suppl. 4, p. 15 1 p.

Research output: Contribution to journalAbstract

Mixed population of competing totally asymmetric simple exclusion processes with a shared reservoir of particles

Greulich, P., Ciandrini, L., Allen, R. & Romano, M. C., 27 Jan 2012, In : Physical Review. E, Statistical, Nonlinear and Soft Matter Physics. 85, 1, 11 p., 011142.

Research output: Contribution to journalArticle

40 Citations (Scopus)

Multiple phase transitions in a system of exclusion processes with limited reservoirs of particles and fuel carriers

Brackley, C., Ciandrini, L. & Romano, M. C., 6 Mar 2012, In : Journal of statistical mechanics-Theory and experiment. 2012, 3, 23 p., P03002 .

Research output: Contribution to journalArticle

8 Citations (Scopus)
2011
Open Access
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8 Citations (Scopus)
6 Downloads (Pure)

Inferring direct coupling by means of recurrences

Zou, Y., Romano, M. C., Thiel, M., Marwan, N. & Kurths, J., Apr 2011, In : International Journal of Bifurcation and Chaos. 21, 4, p. 1099-1111 13 p.

Research output: Contribution to journalArticle

25 Citations (Scopus)

The dynamics of supply and demand in mRNA translation

Brackley, C. A., Romano, M. C. & Thiel, M., 13 Oct 2011, In : PLoS Computational Biology . 7, 10, 16 p., e1002203.

Research output: Contribution to journalArticle

Open Access
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30 Citations (Scopus)
6 Downloads (Pure)
2010

An automated algorithm for the generation of dynamically reconstructed trajectories

Komalapriya, C., Romano, M. C., Thiel, M., Marwan, N., Kurths, J., Kiss, I. Z. & Hudson, J. L., Mar 2010, In : Chaos. 20, 1, 9 p., 013107.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Distinguishing Direct from Indirect Interactions in Oscillatory Networks with Multiple Time Scales

Nawrath, J., Romano, M. C., Thiel, M., Kiss, I. Z., Wickramasinghe, M., Timmer, J., Kurths, J. & Schelter, B., 22 Jan 2010, In : Physical Review Letters. 104, 3, 4 p., 038701.

Research output: Contribution to journalArticle

Open Access
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54 Citations (Scopus)
10 Downloads (Pure)

Fetal maternal heart rate entrainment under controlled maternal breathing

Van Leeuwen, P., Geue, D., Thiel, M., Lange, S., Cysarz, D., Romano, M. C., Kurths, J. & Grönemeyer, D. H. W., 21 May 2010, 17th International Conference on Biomagnetism Advances in Biomagnetism - Biomag2010. Vol. 28. p. 262-265 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Citations (Scopus)

Introduction to Focus Issue: Dynamics in Systems Biology

Brackley, C. A., Ebenhoeh, O., Grebogi, C., Kurths, J., de Moura, A., Romano, M. C. & Thiel, M., Dec 2010, In : Chaos. 20, 4, 3 p., 045101.

Research output: Contribution to journalArticle

Open Access
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8 Citations (Scopus)
7 Downloads (Pure)

Limited resources in a driven diffusion process

Brackley, C. A., Romano, M. C., Grebogi, C. & Thiel, M., 13 Aug 2010, In : Physical Review Letters. 105, 7, 4 p., 078102.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Nonlinear Dynamics and Chaos: Advances and Perspectives

Thiel, M. (ed.), Kurths, J. (ed.), Romano, M. C. (ed.), Karolyi, G. (ed.) & de Moura, A. P. S. (ed.), 22 May 2010, Dordrecht, Netherlands: Springer-Verlag. 293 p. (Understanding Complex Systems)

Research output: Book/ReportBook

Open Access
File
51 Citations (Scopus)
4 Downloads (Pure)

Slow sites in an exclusion process with limited resources

Brackley, C. A., Romano, M. C. & Thiel, M., Nov 2010, In : Physical Review. E, Statistical, Nonlinear and Soft Matter Physics. 82, 5 Pt 1, 051920.

Research output: Contribution to journalArticle

8 Citations (Scopus)
2009

Analysis of high-resolution microelectrode EEG recordings in an animal model of spontaneous limbic seizures

Komalapriya, C., Romano, M. C., Thiel, M., Schwarz, U., Kurths, J., Simonotto, J., Furman, M., Ditto, W. L. & Carney, P. R., Feb 2009, In : International Journal of Bifurcation and Chaos. 19, 2, p. 605–617 13 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Dynamically Reconstructed Trajectories

Komalapriya, C., Thiel, M., Romano, M. C. & Kurths, J., 2009, Nonlinear Dynamics. Rajashekar, S. & Daniel, M. (eds.). New Delhi: Narosa, p. 257-260 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Hypothesis test for synchronization: Twin surrogates revisited

Romano, M. C., Thiel, M., Kurths, J., Mergenthaler, K. & Engbert, R., 31 Mar 2009, In : Chaos. 19, 1, 14 p., 015108.

Research output: Contribution to journalArticle

21 Citations (Scopus)

Influence of paced maternal breathing on fetal–maternal heart rate coordination

Van Leeuwen, P., Geue, D., Thiel, M., Cysarz, D., Lange, S., Romano, M. C., Wessel, N., Kurths, J. & Groenemeyer, D. H., 18 Aug 2009, In : PNAS. 106, 33, p. 13661-13666 6 p.

Research output: Contribution to journalArticle

74 Citations (Scopus)

Queueing phase transition: Theory of Translation

Romano, M. C., Thiel, M., Stansfield, I. & Grebogi, C., 15 May 2009, In : Physical Review Letters. 102, 19, 4 p., 198104.

Research output: Contribution to journalArticle

36 Citations (Scopus)
2008

Analysis of Bivariate Coupling by Means of Recurrence

Bandt, C., Groth, A., Marwan, N., Romano, M. C., Thiel, M., Rosenblum, M. C. & Kurths, J., 2008, Mathematical Methods in Signal Processing and Digital Image Analysis. Dahlhaus, R., Kurths, J., Maass, P. & Timmer, J. (eds.). Berlin, Germany: Springer Science+Business Media, p. 153-182 30 p. (Understanding Complex Systems; vol. 70).

Research output: Chapter in Book/Report/Conference proceedingChapter

8 Citations (Scopus)

Chaos and nonlinear dynamics: Advances and perspectives

Karolyi, G., de Moura, A., Romano, M. C., Thiel, M. & Kurths, J., Dec 2008, In : The European Physical Journal. Special Topics. 165, 1, p. 1-4 4 p.

Research output: Contribution to journalEditorial

Continuous wavelet transform in the analysis of burst synchronization in a coupled laser system

Bergner, A., Meucci, R., Al Naimee, K., Romano, M. C., Thiel, M., Kurths, J. & Arecchi, F. T., 25 Jul 2008, In : Physical Review. E, Statistical, Nonlinear and Soft Matter Physics. 78, 1, 7 p., 016211.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Generating surrogates from recurrences

Thiel, M., Romano, M. C., Kurths, J., Rolfs, M. & Kliegl, R., 28 Feb 2008, In : Philosophical Transactions of the Royal Society A: Mathematical, Physical & Engineering Sciences. 366, 1865, p. 545-557 13 p.

Research output: Contribution to journalArticle

24 Citations (Scopus)

Reconstruction of a system's dynamics from short trajectories

Komalapriya, C., Thiel, M., Romano, M. C., Marwan, N., Schwarz, U. & Kurths, J., 24 Dec 2008, In : Physical Review. E, Statistical, Nonlinear and Soft Matter Physics. 78, 6, 11 p., 066217.

Research output: Contribution to journalArticle

15 Citations (Scopus)
2007

Analytical description of recurrence plots of dynamical systems with nontrivial recurrences

Zou, Y., Thiel, M., Romano, M. C. & Kurths, J., Dec 2007, In : International Journal of Bifurcation and Chaos. 17, 12, p. 4273-4283 11 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Characterization of stickiness by means of recurrence

Zou, Y., Thiel, M., Romano, M. C. & Kurths, J., 12 Oct 2007, In : Chaos. 17, 4, 8 p., 043101.

Research output: Contribution to journalArticle

16 Citations (Scopus)