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Research Output 1991 2020

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Article
2020

Arginine, ornithine and citrulline supplementation in rainbow trout: Free amino acid dynamics and gene expression responses to bacterial infection

Clark, T. C., Tinsley, J., Sigholt, T., MacQueen, D. J. & Martin, S. A. M., 20 Jan 2020, In : Fish & Shellfish Immunology. 98, p. 374-390 17 p.

Research output: Contribution to journalArticle

citrulline
Citrulline
Ornithine
ornithine
bacterial infections
2019
5 Citations (Scopus)
3 Downloads (Pure)

Proteomic comparison of selective breeding and growth hormone transgenesis in fish: Unique pathways to enhanced growth

Causey, D. R., Kim, J-H., Stead, D. A., Martin, S. A. M., Devlin, R. H. & Macqueen, D. J., 10 Feb 2019, In : Journal of Proteomics. 192, p. 114-124 11 p.

Research output: Contribution to journalArticle

Open Access
File
Gene Transfer Techniques
Proteomics
Fish
Growth Hormone
Fishes
3 Citations (Scopus)

Rainbow trout (Oncorhynchus mykiss) urea cycle and polyamine synthesis gene families show dynamic expression responses to inflammation

Clark, T. C., Tinsley, J., Macqueen, D. J. & Martin, S. A. M., Jun 2019, In : Fish & Shellfish Immunology. 89, p. 290-300 11 p.

Research output: Contribution to journalArticle

Polyamines
polyamines
urea
rainbow
Urea
1 Citation (Scopus)
Citrulline
Ornithine
Oncorhynchus mykiss
Gene expression
Liver
2 Citations (Scopus)

The AMPK system of salmonid fishes was expanded through genome duplication and is regulated by growth and immune status in muscle

Causey, D. R., Kim, J. H., Devlin, R. H., Martin, S. A. M. & Macqueen, D. J., 8 Jul 2019, In : Scientific Reports. 9, 11 p., 9819.

Research output: Contribution to journalArticle

Open Access
File
AMP-Activated Protein Kinases
Fishes
Genome
Muscles
Growth

Viral Resistance and IFN Signaling in STAT2 Knockout Fish Cells

Dehler, C. E., Lester, K., Della Pelle, G., Jouneau, L., Houel, A., Collins, C., Dovgan, T., Machat, R., Zou, J., Boudinot, P., Martin, S. A. M. & Collet, B., 15 Jul 2019, In : The Journal of Immunology. 203, 2, p. 465-475 11 p.

Research output: Contribution to journalArticle

Open Access
File
Fishes
Virus Diseases
Antiviral Agents
Salmon
Cell Line
2018
5 Citations (Scopus)

Contrasting effects of acute and chronic stress on the transcriptome, epigenome, and immune response of Atlantic salmon

Uren Webster, T. M., Rodriguez-Barreto, D., Martin, S. A. M., van Oosterhout, C., Orozco-terWengel, P., Cable, J., Hamilton, A., Garcia de Leaniz, C. & Consuegra, S., 2018, In : Epigenetics. 13, 12, p. 1191-1207 17 p.

Research output: Contribution to journalArticle

Open Access
File
Salmo salar
Transcriptome
Epigenomics
Health
DNA Methylation
5 Citations (Scopus)
4 Downloads (Pure)

Core vs. diet -associated and postprandial bacterial communities of the rainbow trout (Oncorhynchus mykiss) midgut and feaces

Mente, E., Nikouli, E., Antonopoulou, E., Martin, S. A. M. & Kormas, K. A., 13 Jun 2018, In : Open Biology. 7, bio034397.

Research output: Contribution to journalArticle

Open Access
File
Oncorhynchus mykiss
Nutrition
bacterial communities
midgut
Bacteria
1 Citation (Scopus)
3 Downloads (Pure)

Four selenoprotein P genes exist in salmonids: Analysis of their origin and expression following Se supplementation and bacterial infection

Pohl, M. A. N., Wang, T., Pohl, T., Sweetman, J., Martin, S. A. M. & Secombes, C. J., 20 Dec 2018, In : PloS ONE. 13, 12, e0209381.

Research output: Contribution to journalArticle

Open Access
File
Selenoprotein P
Salmonidae
selenoproteins
Selenium
bacterial infections
7 Citations (Scopus)

Growth hormone transgenesis in coho salmon disrupts muscle immune function impacting cross-talk with growth systems

Alzaid, A., Kim, J-H., Devlin, R. H., Martin, S. & MacQueen, D. J., 4 Jul 2018, In : Journal of Experimental Biology. 221, 13, jeb173146.

Research output: Contribution to journalArticle

Open Access
File
Oncorhynchus kisutch
Gene Transfer Techniques
somatotropin
Growth Hormone
hormone
5 Citations (Scopus)
5 Downloads (Pure)

High-throughput proteomic profiling of the fish liver following bacterial infection

Causey, D. R., Pohl, M. A. N., Stead, D. A., Martin, S. A. M., Secombes, C. J. & MacQueen, D., 1 Oct 2018, In : BMC Genomics. 19, 719.

Research output: Contribution to journalArticle

Open Access
File
Aeromonas salmonicida
Bacterial Infections
Proteomics
Fishes
Oncorhynchus mykiss
2017
17 Citations (Scopus)
7 Downloads (Pure)

Dietary Yeast Cell Wall Extract Alters the Proteome of the Skin Mucous Barrier in Atlantic Salmon (Salmo salar): Increased Abundance and Expression of a Calreticulin-Like Protein

Micallef, G., Cash, P., Fernandes, J. M. O., Rajan, B., Tinsley, J. W., Bickerdike, R., Martin, S. A. M. & Bowman, A. S., 3 Jan 2017, In : PloS ONE. 12, 1, e0169075.

Research output: Contribution to journalArticle

Open Access
File
calreticulin
Calreticulin
Salmo salar
Proteome
proteome
14 Citations (Scopus)

Divergent regulation of insulin-like growth factor binding protein genes in cultured Atlantic salmon myotubes under different models of catabolism and anabolism

de la serrana Castillo, D. G., Fuentes, E. N., Martin, S. A. M., Johnston, I. A. & MacQueen, D. J., 1 Jun 2017, In : General and Comparative Endocrinology. 247, p. 53-65 13 p.

Research output: Contribution to journalArticle

Salmo salar
Insulin-Like Growth Factor Binding Proteins
insulin-like growth factor binding proteins
Skeletal Muscle Fibers
Muscles
81 Citations (Scopus)
5 Downloads (Pure)

Environmental and physiological factors shape the gut microbiota of Atlantic salmon parr (Salmo salar L.)

Dehler, C. E., Secombes, C. J. & Martin, S. A. M., 20 Jan 2017, In : Aquaculture. 467, p. 149-157 9 p.

Research output: Contribution to journalArticle

Open Access
File
parr
intestinal microorganisms
Salmo salar
microorganisms
fish
35 Citations (Scopus)
3 Downloads (Pure)

Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification

Robertson, F. M., Gundappa, M. K., Grammes, F., Hvidsten, T. R., Redmond, A., Lien, S., Holland, P. W. H., Martin, S. A. M., Sandve, S. R. & MacQueen, D. J., 14 Jun 2017, In : Genome Biology. 18, 111.

Research output: Contribution to journalArticle

Open Access
File
genome
Genome
salmonid
divergence
Radiation
1 Citation (Scopus)
4 Downloads (Pure)

NFAT5 genes are part of the osmotic regulatory system in Atlantic salmon (Salmo salar)

Lorgen, M., Jørgensen, E. H., Jordan, W. C., Martin, S. A. M. & Hazlerigg, D. G., 1 Feb 2017, In : Marine Genomics. 31, p. 25–31 7 p.

Research output: Contribution to journalArticle

Open Access
File
Salmo salar
osmotic stress
parr
Osmotic Pressure
ion
44 Citations (Scopus)
6 Downloads (Pure)
Open Access
File
Nutrigenomics
Immune System
Fishes
Technology
Aquaculture
9 Citations (Scopus)
6 Downloads (Pure)

Phylogeny and expression analysis of C-reactive protein (CRP) and serum amyloid-P (SAP) like genes reveal two distinct groups in fish

Lee, P. T., Bird, S., Zou, J. & Martin, S. A. M., Jun 2017, In : Fish & Shellfish Immunology. 65, p. 42-51 10 p.

Research output: Contribution to journalArticle

Open Access
File
C-reactive protein
amyloid
Amyloid
C-Reactive Protein
Fish
4 Citations (Scopus)
5 Downloads (Pure)

Postprandial hepatic protein expression in trout Oncorhynchus mykiss a proteomics examination

Mente, E., Pierce, G. J., Antonopoulou, E., Stead, D. A. & Martin, SAM., Mar 2017, In : Biochemistry and Biophysics Reports . 9, p. 79-85 7 p.

Research output: Contribution to journalArticle

Open Access
File
Trout
Oncorhynchus mykiss
Proteomics
Meals
Liver
17 Citations (Scopus)
7 Downloads (Pure)

Seawater transfer alters the intestinal microbiota profiles of Atlantic salmon (Salmo salar L.)

Dehler, C. E., Secombes, C. J. & Martin, S. A. M., 24 Oct 2017, In : Scientific Reports. 7, p. 1-11 11 p., 13877.

Research output: Contribution to journalArticle

Open Access
File
Salmo salar
Seawater
Fresh Water
Acclimatization
Fishes
10 Citations (Scopus)
3 Downloads (Pure)

The compositional and metabolic responses of gilthead seabream (Sparus aurata) to a gradient of dietary fish oil and associated n-3 long-chain PUFA content

Houston, S. J. S., Karalazos, V., Tinsley, J., Betancor, M. B., Martin, S. A. M., Tocher, D. R. & Monroig, O., 28 Dec 2017, In : British Journal of Nutrition. 118, 12, p. 1010-1022 13 p.

Research output: Contribution to journalArticle

Open Access
File
Sea Bream
Unsaturated Dietary Fats
Plant Oils
Fish Oils
Fatty Acid Desaturases
2016
5 Citations (Scopus)

Air-classified faba bean protein concentrate is efficiently utilized as a dietary protein source by post-smolt Atlantic salmon (Salmo salar)

De Santis, C., Tocher, D. R., Ruohonen, K., El-Mowafi, A., Martin, S. A. M., Dehler, C. E., Secombes, C. J. & Crampton, V., 1 Feb 2016, In : Aquaculture. 452, p. 169-177 9 p.

Research output: Contribution to journalArticle

protein concentrates
smolt
smolts
faba beans
Vicia faba
20 Citations (Scopus)

Cross Talk Between Growth and Immunity: Coupling of the IGF Axis to Conserved Cytokine Pathways in Rainbow Trout

Alzaid, A., Castro, R., Wang, T., Secombes, C. J., Boudinot, P., Macqueen, D. J. & Martin, S. A. M., 1 Apr 2016, In : Endocrinology. 157, 5, p. 1942–1955 13 p.

Research output: Contribution to journalArticle

Insulin-Like Growth Factor Binding Proteins
Oncorhynchus mykiss
Novirhabdovirus
Somatomedins
Immunity
14 Citations (Scopus)
6 Downloads (Pure)

Development of an Efficient Genome Editing Method by CRISPR/Cas9 in a Fish Cell Line

Dehler, C. E., Boudinot, P., Martin, S. A. M. & Collet, B., Aug 2016, In : Marine Biotechnology. 18, 4, p. 449-452 4 p.

Research output: Contribution to journalArticle

Open Access
File
Clustered Regularly Interspaced Short Palindromic Repeats
genome
geneticin
cell lines
Cell Line
25 Citations (Scopus)
4 Downloads (Pure)

Differential responses of the gut transcriptome to plant protein diets in farmed Atlantic salmon

Krol, E., Douglas, A., Tocher, D. R., Crampton, V. O., Speakman, J. R., Secombes, C. J. & Martin, S. A. M., 29 Feb 2016, In : BMC Genomics. 17, p. 1-16 16 p., 156.

Research output: Contribution to journalArticle

Open Access
File
Salmo salar
Plant Proteins
Transcriptome
Fishes
Vicia faba
16 Citations (Scopus)
7 Downloads (Pure)

Genetic improvement of feed conversion ratio via indirect selection against lipid deposition in farmed rainbow trout (Oncorhynchus mykiss Walbaum)

Kause, A., Kiessling, A., Martin, S. A. M., Houlihan, D. & Ruohonen, K., Nov 2016, In : British Journal of Nutrition. 116, 9, p. 1656-1665 10 p.

Research output: Contribution to journalArticle

Open Access
File
Oncorhynchus mykiss
Lipids
Weight Gain
Muscles
Fishes
29 Citations (Scopus)
7 Downloads (Pure)

Impact of selenium supplementation on fish antiviral responses: a whole transcriptomic analysis in rainbow trout (Oncorhynchus mykiss) fed supranutritional levels of Sel-Plex®

Pacitti, D., Lawan, M. M., Feldmann, J., Sweetman, J., Wang, T., Martin, S. A. M. & Secombes, C. J., 16 Feb 2016, In : BMC Genomics. 17, p. 1-26 26 p., 116.

Research output: Contribution to journalArticle

Open Access
File
Oncorhynchus mykiss
Selenium
Antiviral Agents
Trout
Fishes
4 Citations (Scopus)

Influence of dietary inclusion of a wet processed faba bean protein isolate on post-smolt Atlantic salmon (Salmo salar)

De Santis, C., Martin, S. A. M., Dehler, C. E., Iannetta, P. P. M., Leeming, D. & Tocher, D. R., 1 Dec 2016, In : Aquaculture. 465, p. 124-133 10 p.

Research output: Contribution to journalArticle

protein isolates
smolt
smolts
faba beans
Salmo salar
5 Citations (Scopus)
4 Downloads (Pure)

Interactions between Paramoeba perurans, the causative agent of amoebic gill disease, and the blue mussel, Mytilus edulis

Rolin, C., Graham, J., McCarthy, U., Martin, S. A. M. & Matejusova, I., 1 Apr 2016, In : Aquaculture. 456, p. 1-8 8 p.

Research output: Contribution to journalArticle

Open Access
File
Mytilus edulis
mussels
gills
pathogen
farm
5 Citations (Scopus)
4 Downloads (Pure)

The complete salmonid IGF-IR gene repertoire and its transcriptional response to disease

Alzaid, A., Martin, S. A. M. & Macqueen, D. J., 2016, In : Scientific Reports. 6, 34806.

Research output: Contribution to journalArticle

Open Access
File
Somatomedins
Genes
Fishes
Bacterial Infections
Growth
40 Citations (Scopus)
4 Downloads (Pure)

Transcriptomic responses in the fish intestine

Martin, S. A. M., Dehler, C. E. & Krol, E., Nov 2016, In : Developmental and Comparative Immunology. 64, p. 103-117 15 p.

Research output: Contribution to journalArticle

Open Access
File
RNA Sequence Analysis
Intestines
Fishes
Gene Expression
Costs and Cost Analysis
2015
11 Citations (Scopus)

Antiviral and metabolic gene expression responses to viral infection in Atlantic salmon (Salmo salar)

Heidari, Z., Tinsley, J., Bickerdike, R., McLoughlin, M. F., Zou, J. & Martin, S. A. M., Feb 2015, In : Fish & Shellfish Immunology. 42, 2, p. 297-305 9 p.

Research output: Contribution to journalArticle

Gene expression
Salmo salar
gene expression
Antiviral Agents
Alphavirus
12 Citations (Scopus)
8 Downloads (Pure)

Atlantic salmon (Salmo salar) parr as a model to predict the optimum inclusion of air classified faba bean protein concentrate in feeds for seawater salmon

De Santis, C., Ruohonen, K., Tocher, D. R., Martin, S. A. M., Król, E., Secombes, C. J., Bell, J. G., El-Mowafi, A. & Crampton, V. O., 1 Jul 2015, In : Aquaculture. 444, p. 70-78 9 p.

Research output: Contribution to journalArticle

Open Access
File
protein concentrates
parr
soy protein concentrate
faba beans
Salmo salar
24 Citations (Scopus)
7 Downloads (Pure)

Disparate developmental patterns of immune responses to bacterial and viral infections in fish

Castro, R., Jouneau, L., Tacchi, L., MacQueen, D. J., Alzaid, A., Secombes, C. J., Martin, S. A. M. & Boudinot, P., 2015, In : Scientific Reports. 5, 15458.

Research output: Contribution to journalArticle

Open Access
File
vertebrates
immune response
developmental stages
fish development
viruses
3 Citations (Scopus)

Functional characterisation of a TLR accessory protein, UNC93B1, in Atlantic salmon (Salmo salar)

Lee, P. T., Zou, J., Holland, J. W., Martin, S. A. M., Scott, C. J. W., Kanellos, T. & Secombes, C. J., May 2015, In : Developmental and Comparative Immunology. 50, 1, p. 38-48 11 p.

Research output: Contribution to journalArticle

Salmo salar
Salmon
Head Kidney
Fishes
Spleen
24 Citations (Scopus)

Functional divergence of type 2 deiodinase paralogs in the atlantic salmon

Lorgen, M. C., Casadei, E., Król, E., Douglas, A., Birnie, M. J., Ebbesson, L. O. E., Nilsen, T. O., Jordan, W. C., Jørgensen, E. H., Dardente, H., Hazlerigg, D. G. & Martin, S. A. M., 30 Mar 2015, In : Current Biology. 25, 7, p. 936-941 6 p.

Research output: Contribution to journalArticle

Salmo salar
Iodide Peroxidase
thyroid hormones
Thyroid Hormones
Saline water
9 Citations (Scopus)
5 Downloads (Pure)

Regulatory factors controlling muscle mass: competition between innate immune function and anabolic signals in regulation of atrogin-1 in Atlantic salmon

Heidari, Z., Bickerdike, R., Tinsley, J., Zou, J., Wang, T. Y., Chen, T-Y. & Martin, S. A. M., Oct 2015, In : Molecular Immunology. 67, 2 Part B, p. 341-349 9 p.

Research output: Contribution to journalArticle

Open Access
File
Salmo salar
Interferon Type I
Insulin-Like Growth Factor I
Primary Cell Culture
Interleukin-1
24 Citations (Scopus)
3 Downloads (Pure)

Selenium Supplementation in Fish: A Combined Chemical and Biomolecular Study to Understand Sel-Plex Assimilation and Impact on Selenoproteome Expression in Rainbow Trout (Oncorhynchus mykiss)

Pacitti, D., Lawan, M. M., Sweetman, J., Martin, S. A. M., Feldmann, J. & Secombes, C. J., 15 May 2015, In : PloS ONE. 10, 5, 17 p., e0127041.

Research output: Contribution to journalArticle

Open Access
File
Selenoproteins
selenoproteins
Oncorhynchus mykiss
Nutrition
Selenium
2014
11 Citations (Scopus)
3 Downloads (Pure)

Cloning and characterisation of multiple ferritin isoforms in the Atlantic salmon (Salmo salar)

Lee, J. H., Pooley, N. J., Mohd-Adnan, A. & Martin, S. A. M., 31 Jul 2014, In : PloS ONE. 9, 7, e103729.

Research output: Contribution to journalArticle

Open Access
File
Salmo salar
Cloning
ferritin
Ferritins
Organism Cloning
20 Citations (Scopus)

Extensive local gene duplication and functional divergence among paralogs in Atlantic salmon

Warren, I. A. & Martin, S. A. M., 1 Jul 2014, In : Genome biology and evolution. 6, 7, p. 1790-1805 16 p.

Research output: Contribution to journalArticle

Salmo salar
Gene Duplication
gene duplication
genome
divergence
16 Citations (Scopus)
Interleukin-27
Cloning
interleukins
Human herpesvirus 4
Fish
47 Citations (Scopus)

Identification and characterisation of TLR18-21 genes in Atlantic salmon (Salmo salar)

Lee, P-T., Zou, J., Holland, J. W., Martin, S. A. M., Collet, B., Theo, K. & Secombes, C. J., 2 Dec 2014, In : Fish & Shellfish Immunology. 41, 2, p. 549-559 11 p.

Research output: Contribution to journalArticle

Toll-Like Receptors
teleost
Salmo salar
Genes
kidneys
29 Citations (Scopus)
Thioredoxin-Disulfide Reductase
Thioredoxins
Oncorhynchus mykiss
Fishes
Selenium
68 Citations (Scopus)

Nasal immunity is an ancient arm of the mucosal immune system of vertebrates

Tacchi, L., Musharrafieh, R., Larragoite, E. T., Crossey, K., Erhardt, E. B., Martin, S. A. M., LaPatra, S. E. & Salinas, I., 22 Oct 2014, In : Nature Communications. 5, 5205.

Research output: Contribution to journalArticle

immune systems
vertebrates
Immune system
immunity
Lymphoid Tissue
7 Citations (Scopus)
4 Downloads (Pure)

The vertebrate muscle-specific RING finger protein family includes MuRF4 – A novel, conserved E3-ubiquitin ligase

MacQueen, D. J., Fuentes, E. N., Valdés, J. A., Molina, A. & Martin, S. A. M., 28 Nov 2014, In : FEBS Letters. 588, 23, p. 4390-4397 8 p.

Research output: Contribution to journalArticle

Open Access
File
Ubiquitin-Protein Ligases
Muscle
Vertebrates
Muscles
Proteins
2013
29 Citations (Scopus)
phospholipid-hydroperoxide glutathione peroxidase
Oncorhynchus mykiss
Selenium
Glutathione Peroxidase
phospholipid
30 Citations (Scopus)

Identification and characterization of TLR7, TLR8a2, TLR8b1 and TLR8b2 genes in Atlantic salmon (Salmo salar).

Lee, P-T., Zou, J., Holland, J. W., Martin, S. A. M., Kanellos, T. & Secombes, C. J., Oct 2013, In : Developmental and Comparative Immunology. 41, 2, p. 295-305 11 p.

Research output: Contribution to journalArticle

Salmo salar
Salmon
Head Kidney
Genes
Toll-Like Receptors
23 Citations (Scopus)
4 Downloads (Pure)

Inflammatory responses in primary muscle cell cultures in Atlantic salmon (Salmo salar)

Pooley, N. J., Tacchi, L., Secombes, C. J. & Martin, S. A. M., 1 Nov 2013, In : BMC Genomics. 14, 747.

Research output: Contribution to journalArticle

Open Access
File
Salmo salar
Primary Cell Culture
Muscle Cells
Fishes
Gene Expression
30 Citations (Scopus)

Transforming growth factor-β1b: a second TGF-β1 paralogue in the rainbow trout (Oncorhynchus mykiss) that has a lower constitutive expression but is more responsive to immune stimulation

Maehr, T., Costa, M. M., Vecino, J. L. G., Wadsworth, S., Martin, S. A. M., Wang, T. & Secombes, C. J., Feb 2013, In : Fish & Shellfish Immunology. 34, 2, p. 420-432 13 p.

Research output: Contribution to journalArticle

transforming growth factors
Transforming Growth Factors
rainbow
Oncorhynchus mykiss
Genes
2012
19 Citations (Scopus)
52 Downloads (Pure)

Dietary methylmercury alters the proteome in Atlantic salmon (Salmo salar) kidney

Nøstbakken, O. J., Martin, S. A. M., Torstensen, B. E., Amlund, H., Cash, P. & Olsvik, P. A., Feb 2012, In : Aquatic Toxicology. 108, p. 70-77 8 p.

Research output: Contribution to journalArticle

Salmo salar
methylmercury compounds
methylmercury
Proteome
proteome