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Research Output 2007 2019

  • 363 Citations
  • 12 Article
2019

Effective mismatch repair depends on timely control of PCNA retention on DNA by the Elg1 complex

Paul Solomon Devakumar, L. J., Gaubitz, C., Lundblad, V., Kelch, B. A. & Kubota, T., 26 Jul 2019, In : Nucleic Acids Research. 47, 13, p. 6826-6841 16 p.

Research output: Contribution to journalArticle

Open Access
File
DNA Mismatch Repair
Proliferating Cell Nuclear Antigen
DNA
Mutation Rate
Phenotype
2018
1 Citation (Scopus)
3 Downloads (Pure)

Identification of Elg1 interaction partners and effects on post-replication chromatin re-formation

Gali, V. K., Dickerson, D., Katou, Y., Fujiki, K., Shirahige, K., Owen-Hughes, T., Kubota, T. & Donaldson, A. D., 12 Nov 2018, In : PLoS Genetics. 14, 11, e1007783.

Research output: Contribution to journalArticle

Open Access
File
DNA replication
DNA Replication
Chromatin
chromatin
Proliferating Cell Nuclear Antigen
2016
19 Citations (Scopus)
5 Downloads (Pure)

PCNA Retention on DNA into G2/M Phase Causes Genome Instability in Cells Lacking Elg1

Johnson, C., Gali, V. K., Takahashi, T. S. & Kubota, T., 19 Jul 2016, In : Cell Reports. 16, 3, p. 684-695 12 p.

Research output: Contribution to journalArticle

Open Access
File
Genomic Instability
G2 Phase
Proliferating Cell Nuclear Antigen
Cell Division
Genes
2015
2 Citations (Scopus)

Definition of the transcription factor TdIF1 consensus-binding sequence through genomewide mapping of its binding sites

Koiwai, K., Kubota, T., Watanabe, N., Hori, K., Koiwai, O. & Masai, H., Mar 2015, In : Genes to Cells. 20, 3, p. 242-254 13 p.

Research output: Contribution to journalArticle

Consensus Sequence
Transcription Factors
Binding Sites
Up-Regulation
Inverted Repeat Sequences
30 Citations (Scopus)
5 Downloads (Pure)

Replication-Coupled PCNA Unloading by the Elg1 Complex Occurs Genome-wide and Requires Okazaki Fragment Ligation

Kubota, T., Katou, Y., Nakato, R., Shirahige, K. & Donaldson, A. D., 4 Aug 2015, In : Cell Reports. 12, 5, p. 774-787 14 p.

Research output: Contribution to journalArticle

Open Access
File
Proliferating Cell Nuclear Antigen
Unloading
Ligation
Genes
Genome
2014
112 Citations (Scopus)
34 Downloads (Pure)

Rif1 controls DNA replication by directing Protein Phosphatase 1 to reverse Cdc7-mediated phosphorylation of the MCM complex

Hiraga, S., Alvino, G. M., Chang, F., Lian, H., Sridhar, A., Kubota, T., Brewer, B. J., Weinreich, M., Raghuraman, M. K. & Donaldson, A. D., 15 Feb 2014, In : Genes & Development. 28, 4, p. 372-383 12 p.

Research output: Contribution to journalArticle

Open Access
File
Protein Phosphatase 1
DNA Replication
Phosphorylation
Phosphotransferases
Saccharomycetales
2013
19 Citations (Scopus)
4 Downloads (Pure)

Is PCNA unloading the central function of the Elg1/ATAD5 replication factor C-like complex?

Kubota, T., Myung, J-K. & Donaldson, A. D., 15 Aug 2013, In : Cell Cycle. 12, 16, p. 2570-2579 10 p.

Research output: Contribution to journalArticle

Open Access
File
Replication Protein C
Genomic Instability
Proliferating Cell Nuclear Antigen
Saccharomycetales
Fungal Proteins
2 Citations (Scopus)
4 Downloads (Pure)

TdIF1 recognizes a specific DNA sequence through its Helix-Turn-Helix and AT-hook motifs to regulate gene transcription

Kubota, T., Koiwai, O., Hori, K., Watanabe, N. & Koiwai, K., 10 Jul 2013, In : PloS ONE. 8, 7, 10 p., e66710.

Research output: Contribution to journalArticle

Open Access
File
AT-Hook Motifs
Hooks
DNA sequences
Transcription
transcription (genetics)
111 Citations (Scopus)

The Elg1 replication factor C-like complex functions in PCNA unloading during DNA replication

Kubota, T., Nishimura, K., Kanemaki, M. T. & Donaldson, A. D., 25 Apr 2013, In : Molecular Cell. 50, 2, p. 273-280 8 p.

Research output: Contribution to journalArticle

Replication Protein C
Proliferating Cell Nuclear Antigen
DNA Replication
Chromatin
Genomic Instability
2012
12 Citations (Scopus)

Quantitative proteomic analysis of yeast DNA replication proteins

Kubota, T., Stead, D. A., Hiraga, S., ten Have, S. & Donaldson, A. D., Jun 2012, In : Methods. 57, 2, p. 196-202 7 p.

Research output: Contribution to journalArticle

DNA Replication
Proteomics
Yeast
Chromatin
Yeasts
2011
42 Citations (Scopus)
4 Downloads (Pure)

Quantitative proteomic analysis of chromatin reveals that Ctf18 acts in the DNA replication checkpoint

Kubota, T., Hiraga, S., Yamada, K., Lamond, A. I. & Donaldson, A. D., 1 Jul 2011, In : Molecular and Cellular Proteomics. 10, 7, M110 005561.

Research output: Contribution to journalArticle

Open Access
File
DNA Replication
Proteomics
Chromatin
Replication Protein C
DNA
2007
13 Citations (Scopus)

Identification of functional domains in TdIF1 and its inhibitory mechanism for TdT activity

Kubota, T., Maezawa, S., Koiwai, K., Hayano, T. & Koiwai, O., Aug 2007, In : Genes to Cells. 12, 8, p. 941-959 19 p.

Research output: Contribution to journalArticle

DNA Nucleotidylexotransferase
AT-Hook Motifs
Nuclear Localization Signals
Helix-Turn-Helix Motifs
AT Rich Sequence