Ammonia oxidisers in a non-nitrifying Brazilian savanna soil

Elisa Catão, Cecile Thion, Ricardo Kruger, James I Prosser

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Abstract

Low nitrification rates in Brazilian savanna (Cerrado) soils have puzzled researchers for decades. Potential mechanisms include biological inhibitors, low pH, low microbial abundance and low soil moisture content, which hinders microbial activity, including ammonia oxidation. Two approaches were used to evaluate these potential mechanisms, (i) manipulation of soil moisture and pH in microcosms containing Cerrado soil and (ii) assessment of nitrification inhibition in slurries containing mixtures of Cerrado soil and an actively nitrifying agricultural soil. Despite high ammonium concentration in Cerrado soil microcosms, little NO3− accumulation was observed with increasing moisture or pH, but in some Cerrado soil slurries, AOA amoA transcripts were detected after 14 days. In mixed soil slurries, the final NO3− concentration reflected the initial proportions of agricultural and Cerrado soils in the mixture, providing no evidence of nitrification inhibitors in Cerrado soil. AOA community denaturing gradient gel electrophoresis profiles were similar in the mixed and nitrifying soils. These results suggest that nitrification in Cerrado soils is not constrained by water availability, ammonium availability, low pH, or biological inhibitors and alternative potential explanations for low nitrification levels are discussed. Keywords: ammonia oxidisers, low nitrification, Brazilian savanna, inhibition, pH, soil moisture
Original languageEnglish
Article numberfix122
JournalFEMS Microbiology Ecology
Volume93
Issue number11
Early online date21 Sep 2017
DOIs
Publication statusPublished - Nov 2017

Keywords

  • ammonia oxidisers
  • low nitrificaton
  • Brazilian savanna
  • inhibition
  • pH
  • soil moisture

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