Effect of earthworms on the community structure of active methanotrophic bacteria in a landfill cover soil

Marina Héry, Andrew C Singer, Deepak Kumaresan, Levente Bodrossy, Nancy Stralis-Pavese, Jim I Prosser, Ian P Thompson, J Colin Murrell

Research output: Contribution to journalArticle

60 Citations (Scopus)

Abstract

In the United Kingdom, landfills are the primary anthropogenic source of methane emissions. Methanotrophic bacteria present in landfill biocovers can significantly reduce methane emissions via their capacity to oxidize up to 100% of the methane produced. Several biotic and abiotic parameters regulate methane oxidation in soil, such as oxygen, moisture, methane concentration and temperature. Earthworm-mediated bioturbation has been linked to an increase in methanotrophy in a landfill biocover soil (AC Singer et al., unpublished), but the mechanism of this trophic interaction remains unclear. The aims of this study were to determine the composition of the active methanotroph community and to investigate the interactions between earthworms and bacteria in this landfill biocover soil where the methane oxidation activity was significantly increased by the earthworms. Soil microcosms were incubated with 13C-CH4 and with or without earthworms. DNA and RNA were extracted to characterize the soil bacterial communities, with a particular emphasis on methanotroph populations, using phylogenetic (16S ribosomal RNA) and functional methane monooxygenase (pmoA and mmoX) gene probes, coupled with denaturing gradient-gel electrophoresis, clone libraries and pmoA microarray analyses. Stable isotope probing (SIP) using 13C-CH4 substrate allowed us to link microbial function with identity of bacteria via selective recovery of 'heavy' 13C-labelled DNA or RNA and to assess the effect of earthworms on the active methanotroph populations. Both types I and II methanotrophs actively oxidized methane in the landfill soil studied. Results suggested that the earthworm-mediated increase in methane oxidation rate in the landfill soil was more likely to be due to the stimulation of bacterial growth or activity than to substantial shifts in the methanotroph community structure. A Bacteroidetes-related bacterium was identified only in the active bacterial community of earthworm-incubated soil but its capacity to actually oxidize methane has to be proven.
Original languageEnglish
Pages (from-to)92-104
Number of pages13
JournalThe ISME Journal
Volume2
Issue number1
Early online date29 Nov 2007
DOIs
Publication statusPublished - Jan 2008

Fingerprint

Waste Disposal Facilities
Oligochaeta
Methane
landfills
soil cover
earthworms
earthworm
methane
landfill
community structure
Soil
Bacteria
bacterium
bacteria
methanotrophs
soil
RNA
methane monooxygenase
oxidation
16S Ribosomal RNA

Keywords

  • Animals
  • DNA Fingerprinting
  • DNA, Bacterial
  • DNA, Ribosomal
  • Great Britain
  • Methane
  • Methylococcaceae
  • Oligochaeta
  • Oligonucleotide Array Sequence Analysis
  • Oxidation-Reduction
  • Phylogeny
  • RNA, Ribosomal, 16S
  • Refuse Disposal
  • Sequence Analysis, DNA
  • Soil Microbiology

Cite this

Héry, M., Singer, A. C., Kumaresan, D., Bodrossy, L., Stralis-Pavese, N., Prosser, J. I., ... Murrell, J. C. (2008). Effect of earthworms on the community structure of active methanotrophic bacteria in a landfill cover soil. The ISME Journal, 2(1), 92-104. https://doi.org/10.1038/ismej.2007.66

Effect of earthworms on the community structure of active methanotrophic bacteria in a landfill cover soil. / Héry, Marina; Singer, Andrew C; Kumaresan, Deepak; Bodrossy, Levente; Stralis-Pavese, Nancy; Prosser, Jim I; Thompson, Ian P; Murrell, J Colin.

In: The ISME Journal, Vol. 2, No. 1, 01.2008, p. 92-104.

Research output: Contribution to journalArticle

Héry, M, Singer, AC, Kumaresan, D, Bodrossy, L, Stralis-Pavese, N, Prosser, JI, Thompson, IP & Murrell, JC 2008, 'Effect of earthworms on the community structure of active methanotrophic bacteria in a landfill cover soil', The ISME Journal, vol. 2, no. 1, pp. 92-104. https://doi.org/10.1038/ismej.2007.66
Héry, Marina ; Singer, Andrew C ; Kumaresan, Deepak ; Bodrossy, Levente ; Stralis-Pavese, Nancy ; Prosser, Jim I ; Thompson, Ian P ; Murrell, J Colin. / Effect of earthworms on the community structure of active methanotrophic bacteria in a landfill cover soil. In: The ISME Journal. 2008 ; Vol. 2, No. 1. pp. 92-104.
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