Ensembl 2009

T J P Hubbard; B L Aken; S Ayling; B Ballester; K Beal; E Bragin; S Brent; Y Chen; P Clapham; L Clarke; G Coates; S Fairley; S Fitzgerald; J Fernandez-Banet; L Gordon; S Graf; S Haider; M Hammond; R Holland; K Howe; A Jenkinson; N Johnson; A Kahari; D Keefe; S Keenan; R Kinsella; F Kokocinski; E Kulesha; D Lawson; I Longden; K Megy; P Meidl; B Overduin; A Parker; B Pritchard; D Rios; M Schuster; G Slater; D Smedley; W Spooner; G Spudich; S Trevanion; A Vilella; J Vogel; S White; S Wilder; A Zadissa; E Birney; F Cunningham; V Curwen; R Durbin; X M Fernandez-Suarez; J Herrero; A Kasprzyk; G Proctor; J Smith; S Searle; P Flicek

doi:10.1093/nar/gkn828

Ensembl 2009

T J P Hubbard, B L Aken, S Ayling, B Ballester, K Beal, E Bragin, S Brent, Y Chen, P Clapham, L Clarke, G Coates, S Fairley, S Fitzgerald, J Fernandez-Banet, L Gordon, S Graf, S Haider, M Hammond, R Holland, K HoweA Jenkinson, N Johnson, A Kahari, D Keefe, S Keenan, R Kinsella, F Kokocinski, E Kulesha, D Lawson, I Longden, K Megy, P Meidl, B Overduin, A Parker, B Pritchard, D Rios, M Schuster, G Slater, D Smedley, W Spooner, G Spudich, S Trevanion, A Vilella, J Vogel, S White, S Wilder, A Zadissa, E Birney, F Cunningham, V Curwen, R Durbin, X M Fernandez-Suarez, J Herrero, A Kasprzyk, G Proctor, J Smith, S Searle, P Flicek

Applied Medicine

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693 Citations (Scopus)

Abstract

The Ensembl project (http://www.ensembl.org) is a comprehensive genome information system featuring an integrated set of genome annotation, databases, and other information for chordate, selected model organism and disease vector genomes. As of release 51 (November 2008), Ensembl fully supports 45 species, and three additional species have preliminary support. New species in the past year include orangutan and six additional low coverage mammalian genomes. Major additions and improvements to Ensembl since our previous report include a major redesign of our website; generation of multiple genome alignments and ancestral sequences using the new Enredo-Pecan-Ortheus pipeline and development of our software infrastructure, particularly to support the Ensembl Genomes project (http://www.ensemblgenomes.org/).

Original language	English
Pages (from-to)	D690-D697
Number of pages	8
Journal	Nucleic Acids Research
Volume	37
Issue number	Suppl. 1
Early online date	25 Nov 2008
DOIs	https://doi.org/10.1093/nar/gkn828
Publication status	Published - Jan 2009

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This article appears in: Database issue

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10.1093/nar/gkn828

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Hubbard, TJP, Aken, BL, Ayling, S, Ballester, B, Beal, K, Bragin, E, Brent, S, Chen, Y, Clapham, P, Clarke, L, Coates, G, Fairley, S, Fitzgerald, S, Fernandez-Banet, J, Gordon, L, Graf, S, Haider, S, Hammond, M, Holland, R, Howe, K, Jenkinson, A, Johnson, N, Kahari, A, Keefe, D, Keenan, S, Kinsella, R, Kokocinski, F, Kulesha, E, Lawson, D, Longden, I, Megy, K, Meidl, P, Overduin, B, Parker, A, Pritchard, B, Rios, D, Schuster, M, Slater, G, Smedley, D, Spooner, W, Spudich, G, Trevanion, S, Vilella, A, Vogel, J, White, S, Wilder, S, Zadissa, A, Birney, E, Cunningham, F, Curwen, V, Durbin, R, Fernandez-Suarez, XM, Herrero, J, Kasprzyk, A, Proctor, G, Smith, J, Searle, S & Flicek, P 2009, 'Ensembl 2009', Nucleic Acids Research, vol. 37, no. Suppl. 1, pp. D690-D697. https://doi.org/10.1093/nar/gkn828

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SP - D690-D697

JO - Nucleic Acids Research

JF - Nucleic Acids Research

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ER -

Ensembl 2009

Abstract

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