Ensembl 2013

Paul Flicek, Ikhlak Ahmed, M Ridwan Amode, Daniel Barrell, Kathryn Beal, Simon Brent, Denise Carvalho-Silva, Peter Clapham, Guy Coates, Susan Fairley, Stephen Fitzgerald, Laurent Gil, Carlos García-Girón, Leo Gordon, Thibaut Hourlier, Sarah Hunt, Thomas Juettemann, Andreas K Kähäri, Stephen Keenan, Monika Komorowska & 35 others Eugene Kulesha, Ian Longden, Thomas Maurel, William M McLaren, Matthieu Muffato, Rishi Nag, Bert Overduin, Miguel Pignatelli, Bethan Pritchard, Emily Pritchard, Harpreet Singh Riat, Graham R S Ritchie, Magali Ruffier, Michael Schuster, Daniel Sheppard, Daniel Sobral, Kieron Taylor, Anja Thormann, Stephen Trevanion, Simon White, Steven P Wilder, Bronwen L Aken, Ewan Birney, Fiona Cunningham, Ian Dunham, Jennifer Harrow, Javier Herrero, Tim J P Hubbard, Nathan Johnson, Rhoda Kinsella, Anne Parker, Giulietta Spudich, Andy Yates, Amonida Zadissa, Stephen M J Searle

Research output: Contribution to journalArticle

722 Citations (Scopus)

Abstract

The Ensembl project (http://www.ensembl.org) provides genome information for sequenced chordate genomes with a particular focus on human, mouse, zebrafish and rat. Our resources include evidenced-based gene sets for all supported species; large-scale whole genome multiple species alignments across vertebrates and clade-specific alignments for eutherian mammals, primates, birds and fish; variation data resources for 17 species and regulation annotations based on ENCODE and other data sets. Ensembl data are accessible through the genome browser at http://www.ensembl.org and through other tools and programmatic interfaces.
Original languageEnglish
Pages (from-to)D48-D55
Number of pages8
JournalNucleic Acids Research
Volume41
Issue numberD1
Early online date30 Nov 2012
DOIs
Publication statusPublished - Jan 2013

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Genome
Chordata
Zebrafish
Primates
Birds
Vertebrates
Mammals
Fishes
Genes
Datasets

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Flicek, P., Ahmed, I., Amode, M. R., Barrell, D., Beal, K., Brent, S., ... Searle, S. M. J. (2013). Ensembl 2013. Nucleic Acids Research, 41(D1), D48-D55. https://doi.org/10.1093/nar/gks1236

Ensembl 2013. / Flicek, Paul; Ahmed, Ikhlak; Amode, M Ridwan; Barrell, Daniel; Beal, Kathryn; Brent, Simon; Carvalho-Silva, Denise; Clapham, Peter; Coates, Guy; Fairley, Susan; Fitzgerald, Stephen; Gil, Laurent; García-Girón, Carlos; Gordon, Leo; Hourlier, Thibaut; Hunt, Sarah; Juettemann, Thomas; Kähäri, Andreas K; Keenan, Stephen; Komorowska, Monika; Kulesha, Eugene; Longden, Ian; Maurel, Thomas; McLaren, William M; Muffato, Matthieu; Nag, Rishi; Overduin, Bert; Pignatelli, Miguel; Pritchard, Bethan; Pritchard, Emily; Riat, Harpreet Singh; Ritchie, Graham R S; Ruffier, Magali; Schuster, Michael; Sheppard, Daniel; Sobral, Daniel; Taylor, Kieron; Thormann, Anja; Trevanion, Stephen; White, Simon; Wilder, Steven P; Aken, Bronwen L; Birney, Ewan; Cunningham, Fiona; Dunham, Ian; Harrow, Jennifer; Herrero, Javier; Hubbard, Tim J P; Johnson, Nathan; Kinsella, Rhoda; Parker, Anne; Spudich, Giulietta; Yates, Andy; Zadissa, Amonida; Searle, Stephen M J.

In: Nucleic Acids Research, Vol. 41, No. D1, 01.2013, p. D48-D55.

Research output: Contribution to journalArticle

Flicek, P, Ahmed, I, Amode, MR, Barrell, D, Beal, K, Brent, S, Carvalho-Silva, D, Clapham, P, Coates, G, Fairley, S, Fitzgerald, S, Gil, L, García-Girón, C, Gordon, L, Hourlier, T, Hunt, S, Juettemann, T, Kähäri, AK, Keenan, S, Komorowska, M, Kulesha, E, Longden, I, Maurel, T, McLaren, WM, Muffato, M, Nag, R, Overduin, B, Pignatelli, M, Pritchard, B, Pritchard, E, Riat, HS, Ritchie, GRS, Ruffier, M, Schuster, M, Sheppard, D, Sobral, D, Taylor, K, Thormann, A, Trevanion, S, White, S, Wilder, SP, Aken, BL, Birney, E, Cunningham, F, Dunham, I, Harrow, J, Herrero, J, Hubbard, TJP, Johnson, N, Kinsella, R, Parker, A, Spudich, G, Yates, A, Zadissa, A & Searle, SMJ 2013, 'Ensembl 2013', Nucleic Acids Research, vol. 41, no. D1, pp. D48-D55. https://doi.org/10.1093/nar/gks1236
Flicek P, Ahmed I, Amode MR, Barrell D, Beal K, Brent S et al. Ensembl 2013. Nucleic Acids Research. 2013 Jan;41(D1):D48-D55. https://doi.org/10.1093/nar/gks1236
Flicek, Paul ; Ahmed, Ikhlak ; Amode, M Ridwan ; Barrell, Daniel ; Beal, Kathryn ; Brent, Simon ; Carvalho-Silva, Denise ; Clapham, Peter ; Coates, Guy ; Fairley, Susan ; Fitzgerald, Stephen ; Gil, Laurent ; García-Girón, Carlos ; Gordon, Leo ; Hourlier, Thibaut ; Hunt, Sarah ; Juettemann, Thomas ; Kähäri, Andreas K ; Keenan, Stephen ; Komorowska, Monika ; Kulesha, Eugene ; Longden, Ian ; Maurel, Thomas ; McLaren, William M ; Muffato, Matthieu ; Nag, Rishi ; Overduin, Bert ; Pignatelli, Miguel ; Pritchard, Bethan ; Pritchard, Emily ; Riat, Harpreet Singh ; Ritchie, Graham R S ; Ruffier, Magali ; Schuster, Michael ; Sheppard, Daniel ; Sobral, Daniel ; Taylor, Kieron ; Thormann, Anja ; Trevanion, Stephen ; White, Simon ; Wilder, Steven P ; Aken, Bronwen L ; Birney, Ewan ; Cunningham, Fiona ; Dunham, Ian ; Harrow, Jennifer ; Herrero, Javier ; Hubbard, Tim J P ; Johnson, Nathan ; Kinsella, Rhoda ; Parker, Anne ; Spudich, Giulietta ; Yates, Andy ; Zadissa, Amonida ; Searle, Stephen M J. / Ensembl 2013. In: Nucleic Acids Research. 2013 ; Vol. 41, No. D1. pp. D48-D55.
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