Fine-mapping of muscle weight QTL in LG/J and SM/J intercrosses

Arimantas Lionikas (Corresponding Author), Riyan Cheng, Jackie Lim, Abraham Palmer, David Blizard

Research output: Contribution to journalArticle

26 Citations (Scopus)

Abstract

Genetic variation plays a substantial role in variation in strength, but the underlying mechanisms remain poorly understood. The objective of the present study was to examine the mechanisms underlying variation in muscle mass, a predictor of strength, between LG/J and SM/J strains, which are the inbred progeny of mice selected, respectively, for high and low body weight. We measured weight of five hindlimb muscles in LG/J and SM/J males and females, in F(1) and F(2) intercrosses, and in an advanced intercross (AI), F(34), between the two. F(2) mice were genotyped using 162 SNPs throughout the genome; F(34) mice were genotyped at 3,015 SNPs. A twofold difference in muscle mass between the LG/J and SM/J mouse strains was observed. Integrated genome-wide association analysis in the combined population of F(2) and AI identified 22 quantitative trait loci (QTL; genome-wide P < 0.05) affecting muscle weight on Chr 2 (2 QTL), 4, 5, 6 (7 QTL), 7 (4 QTL), 8 (4 QTL), and 11 (3 QTL). The LG/J allele conferred greater muscle weight in all cases. The 1.5-LOD QTL support intervals ranged between 0.3 and 13.4 Mb (median 3.7 Mb) restricting the list of candidates to between 5 and 97 genes. Selection for body weight segregated the alleles affecting skeletal muscle, the most abundant tissue in the body. Combination of analyses in an F(2) and AI was an effective strategy to detect and refine the QTL in a genome-wide manner. The achieved resolution facilitates further elucidation of the underlying genetic mechanisms affecting muscle mass.
Original languageEnglish
Pages (from-to)33-38
Number of pages6
JournalPhysiological Genomics
Volume42A
Issue number1
Early online date13 Jul 2010
DOIs
Publication statusPublished - Sep 2010

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Weights and Measures
Muscles
Genome
Single Nucleotide Polymorphism
Alleles
Body Weight
Quantitative Trait Loci
Genome-Wide Association Study
Hindlimb
Skeletal Muscle
Population
Genes

Keywords

  • skeletal muscle size
  • quantitative trait loci
  • fine mapping

Cite this

Fine-mapping of muscle weight QTL in LG/J and SM/J intercrosses. / Lionikas, Arimantas (Corresponding Author); Cheng, Riyan; Lim, Jackie; Palmer, Abraham; Blizard, David.

In: Physiological Genomics, Vol. 42A, No. 1, 09.2010, p. 33-38.

Research output: Contribution to journalArticle

Lionikas, Arimantas ; Cheng, Riyan ; Lim, Jackie ; Palmer, Abraham ; Blizard, David. / Fine-mapping of muscle weight QTL in LG/J and SM/J intercrosses. In: Physiological Genomics. 2010 ; Vol. 42A, No. 1. pp. 33-38.
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