Gene length as a regulator for ribosome recruitment and protein synthesis: theoretical insights

Lucas D. Fernandes, Alessandro P.S.De Moura, Luca Ciandrini*

*Corresponding author for this work

Research output: Contribution to journalArticle

10 Citations (Scopus)
5 Downloads (Pure)

Abstract

Protein synthesis rates are determined, at the translational level, by properties of the transcript's sequence. The efficiency of an mRNA can be tuned by varying the ribosome binding sites controlling the recruitment of the ribosomes, or the codon usage establishing the speed of protein elongation. In this work we propose transcript length as a further key determinant of translation efficiency. Based on a physical model that considers the kinetics of ribosomes advancing on the mRNA and diffusing in its surrounding, as well as mRNA circularisation and ribosome drop-off, we explain how the transcript length may play a central role in establishing ribosome recruitment and the overall translation rate of an mRNA. According to our results, the proximity of the 3′ end to the ribosomal recruitment site of the mRNA could induce a feedback in the translation process that would favour the recycling of ribosomes. We also demonstrate how this process may be involved in shaping the experimental ribosome density-gene length dependence. Finally, we argue that cells could exploit this mechanism to adjust and balance the usage of its ribosomal resources.

Original languageEnglish
Article number17409
JournalScientific Reports
Volume7
DOIs
Publication statusPublished - 12 Dec 2017

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ribosomes
protein synthesis
translation (genetics)
genes
physical models
codons
recycling
binding sites
kinetics
proteins

Keywords

  • biological physics
  • systems biology
  • translation

ASJC Scopus subject areas

  • General

Cite this

Gene length as a regulator for ribosome recruitment and protein synthesis : theoretical insights. / Fernandes, Lucas D.; Moura, Alessandro P.S.De; Ciandrini, Luca.

In: Scientific Reports, Vol. 7, 17409, 12.12.2017.

Research output: Contribution to journalArticle

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