Heterologous expression of a cryptic gene cluster from Streptomyces leeuwenhoekii C34T yields a novel lasso peptide, leepeptin

Juan Pablo Gomez-Escribano, Jean Franco Castro, Valeria Razmilic, Scott A Jarmusch, Gerhard Saalbach, Rainer Ebel, Marcel Jaspars, Barbara Andrews, Juan A Asenjo, Mervyn J Bibb*

*Corresponding author for this work

Research output: Contribution to journalArticle

3 Citations (Scopus)
3 Downloads (Pure)

Abstract

Analysis of the genome sequence of Streptomyces leeuwenhoekii C34T identified biosynthetic gene clusters (BGCs) for three different lasso peptides (Lp1, Lp2, and Lp3) which were not known to be made by the strain. Lasso peptides represent relatively new members of the RiPP (ribosomally synthesized and posttranslationally modified peptides) family of natural products and have not been extensively studied. Lp3, whose production could be detected in culture supernatants from S. leeuwenhoekii C34T and after heterologous expression of its BGC in Streptomyces coelicolor, is identical to the previously characterized chaxapeptin. Lp1, whose production could not be detected or achieved heterologously, appears to be identical to a recently identified member of the citrulassin family of lasso peptides. Since production of Lp2 by S. leeuwenhoekii C34T was not observed, its BGC was also expressed in S. coelicolor. The lasso peptide was isolated and its structure confirmed by mass spectrometry and nuclear magnetic resonance analyses, revealing a novel structure that appears to represent a new family of lasso peptides.

IMPORTANCE Recent developments in genome sequencing combined with bioinformatic analysis have revealed that actinomycetes contain a plethora of unexpected BGCs and thus have the potential to produce many more natural products than previously thought. This reflects the inability to detect the production of these compounds under laboratory conditions, perhaps through the use of inappropriate growth media or the absence of the environmental cues required to elicit expression of the corresponding BGCs. One approach to overcoming this problem is to circumvent the regulatory mechanisms that control expression of the BGC in its natural host by deploying heterologous expression. The generally compact nature of lasso peptide BGCs makes them particularly amenable to this approach, and, in the example given here, analysis revealed a new member of the lasso peptide family of RiPPs. This approach should be readily applicable to other cryptic lasso peptide gene clusters and would also facilitate the design and production of nonnatural variants by changing the sequence encoding the core peptide, as has been achieved with other classes of RiPPs.
Original languageEnglish
Article numbere01752-19
Number of pages13
JournalApplied and Environmental Microbiology
Volume85
Issue number23
Early online date14 Nov 2019
DOIs
Publication statusPublished - 1 Dec 2019

Keywords

  • Streptomyces
  • natural products
  • RiPP
  • Lasso peptides
  • Heterologous expression
  • COELICOLOR
  • DESERT
  • heterologous expression
  • RESTRICTION
  • BIOSYNTHESIS
  • CHAXAMYCINS
  • SEQUENCE
  • RESISTANCE
  • lasso peptide
  • BINDING
  • TOOL

Fingerprint Dive into the research topics of 'Heterologous expression of a cryptic gene cluster from Streptomyces leeuwenhoekii C34<sup>T</sup> yields a novel lasso peptide, leepeptin'. Together they form a unique fingerprint.

  • Cite this

    Gomez-Escribano, J. P., Castro, J. F., Razmilic, V., Jarmusch, S. A., Saalbach, G., Ebel, R., Jaspars, M., Andrews, B., Asenjo, J. A., & Bibb, M. J. (2019). Heterologous expression of a cryptic gene cluster from Streptomyces leeuwenhoekii C34T yields a novel lasso peptide, leepeptin. Applied and Environmental Microbiology, 85(23), [e01752-19]. https://doi.org/10.1128/AEM.01752-19