Ionomics Atlas

A tool to explore interconnected ionomic, genomic and environmental data

Eduard C. Dragut, Mourad Ouzzani, Amgad Madkour, Mohamed Nabeel, Peter Baker, David E. Salt

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

Abstract

Ionomics Atlas facilitates access, analysis and interpretation of an existing large-scale heterogeneous dataset consisting of ionomic (elemental composition of an organism), genetic (heritable changes in the DNA of an organism) and geographic information (geographic location, altitude, climate, soil properties, etc). Ionomics Atlas allows connections to be made between the genetic regulation of the ionome of plant populations and their landscape distribution, allowing scientists to investigate the role of natural ionomic variation in adaptation of populations to varied environmental conditions in the landscape. The goal of the Ionomics Atlas is twofold: (1) to allow both novice and expert users to easily access and explore layers of interconnected ionomic, genomic and environmental data; and (2) to facilitate hypothesis generation and testing by proving direct querying and browsing of the data as well as different display modes of the results.
Original languageEnglish
Title of host publicationCIKM '12
Subtitle of host publicationProceedings of the 21st ACM international conference on Information and knowledge management
Place of PublicationNew York, U.S.A.
PublisherACM Press
Pages2680-2682
Number of pages3
ISBN (Print)9781450311564
DOIs
Publication statusPublished - 2012

Fingerprint

atlas
genomics
browsing
soil property
environmental conditions
DNA
climate
environmental data
organism
regulation
plant population
distribution
analysis

Cite this

Dragut, E. C., Ouzzani, M., Madkour, A., Nabeel, M., Baker, P., & Salt, D. E. (2012). Ionomics Atlas: A tool to explore interconnected ionomic, genomic and environmental data. In CIKM '12: Proceedings of the 21st ACM international conference on Information and knowledge management (pp. 2680-2682). New York, U.S.A.: ACM Press. https://doi.org/10.1145/2396761.2398724

Ionomics Atlas : A tool to explore interconnected ionomic, genomic and environmental data. / Dragut, Eduard C.; Ouzzani, Mourad; Madkour, Amgad; Nabeel, Mohamed; Baker, Peter; Salt, David E.

CIKM '12: Proceedings of the 21st ACM international conference on Information and knowledge management. New York, U.S.A. : ACM Press, 2012. p. 2680-2682.

Research output: Chapter in Book/Report/Conference proceedingChapter

Dragut, EC, Ouzzani, M, Madkour, A, Nabeel, M, Baker, P & Salt, DE 2012, Ionomics Atlas: A tool to explore interconnected ionomic, genomic and environmental data. in CIKM '12: Proceedings of the 21st ACM international conference on Information and knowledge management. ACM Press, New York, U.S.A., pp. 2680-2682. https://doi.org/10.1145/2396761.2398724
Dragut EC, Ouzzani M, Madkour A, Nabeel M, Baker P, Salt DE. Ionomics Atlas: A tool to explore interconnected ionomic, genomic and environmental data. In CIKM '12: Proceedings of the 21st ACM international conference on Information and knowledge management. New York, U.S.A.: ACM Press. 2012. p. 2680-2682 https://doi.org/10.1145/2396761.2398724
Dragut, Eduard C. ; Ouzzani, Mourad ; Madkour, Amgad ; Nabeel, Mohamed ; Baker, Peter ; Salt, David E. / Ionomics Atlas : A tool to explore interconnected ionomic, genomic and environmental data. CIKM '12: Proceedings of the 21st ACM international conference on Information and knowledge management. New York, U.S.A. : ACM Press, 2012. pp. 2680-2682
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