Molecular Profiling of Multiplexed Gene Markers to Assess Viability of Ex Vivo Human Colon Explant Cultures

Janice E Drew, Andrew J Farquharson, Hollie Vase, Frank A Carey, Robert J C Steele, Ruth A Ross, David C Bunton

Research output: Contribution to journalArticle

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Abstract

Human colon tissue explant culture provides a physiologically relevant model system to study human gut biology. However, the small (20-30 mg) and complex tissue samples used present challenges for monitoring tissue stability, viability, and provision of sufficient tissue for analyses. Combining molecular profiling with explant culture has potential to overcome such limitations, permitting interrogation of complex gene regulation required to maintain gut mucosa in culture, monitor responses to culture environments and interventions. Human ex vivo colon explant gene expression profiles were assayed using an in-house custom-designed hCellMarkerPlex assay at culture time points 0, 1, 2, 4, and 14 h. Characteristic profiles of epithelial cell markers linked to differentiation, cellular polarization, and apoptosis were correlated with visible histochemical changes in explant epithelium during culture and tissue donors. The GenomeLab System provides effective assay of multiple targets not possible from small tissue samples with conventional gene expression technology platforms. This is advantageous to increase the utility of the ex vivo human colon model in applications to interrogate this complex and dynamic tissue environment for use in analytical testing.

Original languageEnglish
Pages (from-to)425-430
Number of pages6
JournalBioResearch Open Access
Volume4
Issue number1
DOIs
Publication statusPublished - 13 Nov 2015

Fingerprint

Cell culture
Colon
Genes
Tissue
Gene expression
Assays
Tissue Survival
Tissue culture
Transcriptome
Mucous Membrane
Epithelium
Epithelial Cells
Tissue Donors
Apoptosis
Technology
Gene Expression
Polarization
Monitoring
Testing

Keywords

  • cell marker
  • gut explant
  • microanatomy
  • molecular profile
  • multiplex

Cite this

Molecular Profiling of Multiplexed Gene Markers to Assess Viability of Ex Vivo Human Colon Explant Cultures. / Drew, Janice E; Farquharson, Andrew J; Vase, Hollie; Carey, Frank A; Steele, Robert J C; Ross, Ruth A; Bunton, David C.

In: BioResearch Open Access, Vol. 4, No. 1, 13.11.2015, p. 425-430.

Research output: Contribution to journalArticle

Drew, Janice E ; Farquharson, Andrew J ; Vase, Hollie ; Carey, Frank A ; Steele, Robert J C ; Ross, Ruth A ; Bunton, David C. / Molecular Profiling of Multiplexed Gene Markers to Assess Viability of Ex Vivo Human Colon Explant Cultures. In: BioResearch Open Access. 2015 ; Vol. 4, No. 1. pp. 425-430.
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