Three-dimensional reconstruction of ductal carcinoma in situ with virtual slides

Mary E Booth, Darren Treanor, Nicholas Roberts, Derek R Magee, Valerie Speirs, Andrew M Hanby

Research output: Contribution to journalArticle

12 Citations (Scopus)

Abstract

AIMS: This study aimed to assess the feasibility of using virtual slides to create 3D histopathological reconstructions to aid in the study of the biology of DCIS.

METHODS: Four μm thick serial sections of formalin fixed paraffin embedded tissue from three cases were cut and mounted onto glass slides, stained with haematoxylin and eosin, then scanned. The three image stacks comprised 30, 115 and 100 scanned sections creating a similar number of virtual slides. The virtual slides were registered using custom 3D software to create 3D tissue volumes. The volumes were annotated to highlight distinct features and 3D visualisations (segmentations) were created to study these features in 3D.

RESULTS: The most time-intensive step was the manual annotation of virtual slides 3D histopathological reconstructions were created of (i) DCIS surrounded by adjacent invasion; (ii) pure DCIS and (iii) a 'normal' lobule.

CONCLUSION: 3D in silico reconstructions of DCIS were created and more extensive studies can now be done within a realistic timescale. We have identified structural similarities between a benign lobule and DCIS which support the view that much DCIS, apparently in a 'duct' is contained within and expanded lobule. This method has the potential to provide insights into the biology of DCIS.

Original languageEnglish
Pages (from-to)966-973
Number of pages8
JournalHistopathology
Volume66
Issue number7
Early online date26 Sep 2014
DOIs
Publication statusPublished - Jun 2015

Fingerprint

Carcinoma, Intraductal, Noninfiltrating
Hematoxylin
Eosine Yellowish-(YS)
Computer Simulation
Paraffin
Formaldehyde
Glass
Software

Keywords

  • Breast Neoplasms
  • Carcinoma, Intraductal, Noninfiltrating
  • Feasibility Studies
  • Female
  • Humans
  • Imaging, Three-Dimensional
  • Software
  • Journal Article

Cite this

Booth, M. E., Treanor, D., Roberts, N., Magee, D. R., Speirs, V., & Hanby, A. M. (2015). Three-dimensional reconstruction of ductal carcinoma in situ with virtual slides. Histopathology, 66(7), 966-973. https://doi.org/10.1111/his.12561

Three-dimensional reconstruction of ductal carcinoma in situ with virtual slides. / Booth, Mary E; Treanor, Darren; Roberts, Nicholas; Magee, Derek R; Speirs, Valerie; Hanby, Andrew M.

In: Histopathology, Vol. 66, No. 7, 06.2015, p. 966-973.

Research output: Contribution to journalArticle

Booth, ME, Treanor, D, Roberts, N, Magee, DR, Speirs, V & Hanby, AM 2015, 'Three-dimensional reconstruction of ductal carcinoma in situ with virtual slides', Histopathology, vol. 66, no. 7, pp. 966-973. https://doi.org/10.1111/his.12561
Booth, Mary E ; Treanor, Darren ; Roberts, Nicholas ; Magee, Derek R ; Speirs, Valerie ; Hanby, Andrew M. / Three-dimensional reconstruction of ductal carcinoma in situ with virtual slides. In: Histopathology. 2015 ; Vol. 66, No. 7. pp. 966-973.
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AB - AIMS: This study aimed to assess the feasibility of using virtual slides to create 3D histopathological reconstructions to aid in the study of the biology of DCIS.METHODS: Four μm thick serial sections of formalin fixed paraffin embedded tissue from three cases were cut and mounted onto glass slides, stained with haematoxylin and eosin, then scanned. The three image stacks comprised 30, 115 and 100 scanned sections creating a similar number of virtual slides. The virtual slides were registered using custom 3D software to create 3D tissue volumes. The volumes were annotated to highlight distinct features and 3D visualisations (segmentations) were created to study these features in 3D.RESULTS: The most time-intensive step was the manual annotation of virtual slides 3D histopathological reconstructions were created of (i) DCIS surrounded by adjacent invasion; (ii) pure DCIS and (iii) a 'normal' lobule.CONCLUSION: 3D in silico reconstructions of DCIS were created and more extensive studies can now be done within a realistic timescale. We have identified structural similarities between a benign lobule and DCIS which support the view that much DCIS, apparently in a 'duct' is contained within and expanded lobule. This method has the potential to provide insights into the biology of DCIS.

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