Research output per year
Research output per year
- 1 - 50 out of 132 results
Search results
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2024
Why does increased microbial fermentation in the human colon shift toward butyrate?
Flint, H. J., Louis, P. & Duncan, S., 25 Apr 2024, (Accepted/In press) In: AIMS Microbiology.Research output: Contribution to journal › Article › peer-review
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2023
Buckwheat (Fagopyrum esculentum) Hulls Are a Rich Source of Fermentable Dietary Fibre and Bioactive Phytochemicals: International Journal of Molecular Sciences
Zhang, Z., Fan, S., Duncan, G. J., Morris, A., Henderson, D., Morrice, P., Russell, W. R., Duncan, S. H. & Neacsu, M., 14 Nov 2023, In: International Journal of Molecular Sciences. 24, 22, 23 p., 16310.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
Bioprocessing of Hempseed (Cannabis sativa L.) Food By-Products Increased Nutrient and Phytochemical In Vitro Bioavailability during Digestion and Microbial Fermentation
Fan, S., Zhang, Z., Duncan, G. J., Morris, A., Scobbie, L., Henderson, D., Morrice, P., Russell, W. R., Duncan, S. H. & Neacsu, M., 8 May 2023, In: Applied Sciences. 13, 9, 19 p., 5781.Research output: Contribution to journal › Article › peer-review
Open AccessFile2 Citations (Scopus)2 Downloads (Pure) -
Links between diet, intestinal anaerobes, microbial metabolites and health
Duncan, S., Conti, E., Ricci, L. & Walker, A., 1 May 2023, In: Biomedicines. 11, 5, 20 p., 1338.Research output: Contribution to journal › Article › peer-review
Open AccessFile5 Citations (Scopus)1 Downloads (Pure) -
Exploiting Underutilised crops
Neacsu, M. & Duncan, S., 8 Mar 2023, In: Food Science & Technology. 37, 1, p. 36-39 4 p.Research output: Contribution to journal › Article › peer-review
Open Access -
2022
Impact of changes at the Candida albicans cell surface upon immunogenicity and colonisation in the gastrointestinal tract
Avelar, G. M., Dambuza, I. M., Ricci, L., Yuecel, R., Mackenzie, K., Childers, D. S., Bain, J. M., Pradhan, A., Larcombe, D. E., Netea, M. G., Erwig, L. P., Brown, G. D., Duncan, S. H., Gow, N. A. R., Walker, A. W. & Brown, A. J. P., 1 Dec 2022, In: The Cell Surface. 8, 13 p., 100084.Research output: Contribution to journal › Article › peer-review
Open AccessFile4 Citations (Scopus)1 Downloads (Pure) -
High throughput method development and optimised production of leaf protein concentrates with potential to support the agri-industry
Iyer, A., Guerrier, L., Leveque, S., Bestwick, C., Duncan, S. & Russell, W., 20 Nov 2022, In: Journal of Food Measurement and Characterization. 16, p. 49–65 17 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile4 Citations (Scopus)8 Downloads (Pure) -
Human gut bifidobacteria inhibit the growth of the opportunistic fungal pathogen Candida albicans
Ricci, L., Mackie, J., Donachie, G. E., Chapuis, A. F., Mezerova, K., Lenardon, M., Brown, A., Duncan, S. & Walker, A., Oct 2022, In: FEMS Microbiology Ecology. 98, 10, 15 p., fiac095.Research output: Contribution to journal › Article › peer-review
Open AccessFile10 Citations (Scopus)7 Downloads (Pure) -
Survival strategies and metabolic interactions between Ruminococcus gauvreauii and Ruminococcoides bili, isolated from human bile
Molinero, N., Conti, E., Walker, A., Margolles, A., Duncan, S. & Delgado, S., Aug 2022, In: Microbiology spectrum. 10, 4, 14 p., e0277621.Research output: Contribution to journal › Article › peer-review
Open AccessFile8 Citations (Scopus) -
Microbial lactate utilisation and the stability of the gut microbiome
Louis, P., Duncan, S., Sheridan, P., Walker, A. & Flint, H. J., 4 May 2022, In: Gut Microbiome. 3, 16 p., e3.Research output: Contribution to journal › Article › peer-review
Open AccessFile3 Downloads (Pure) -
Higher total faecal short chain fatty concentrations correlate with increasing proportions of butyrate and decreasing proportions of branched chain fatty acids across multiple human studies
Scott, K., LaBouyer, M., Holtrop, G., Horgan, G., Gratz, S., Belenguer, A., Smith, N., Walker, A., Duncan, S., Johnstone, A., Louis, P. & Flint, H. J., 30 Mar 2022, In: Gut Microbiome. 3, 14 p., e2.Research output: Contribution to journal › Article › peer-review
Open AccessFile8 Downloads (Pure) -
Distribution, organization and expression of genes concerned with anaerobic lactate utilization in human intestinal bacteria
Sheridan, P., Louis, P., Tsompanidou, E., Shaw, S., Harmsen, H. J. M., Duncan, S., Flint, H. J. & Walker, A., Jan 2022, In: Microbial Genomics. 8, 1, 18 p., 000739.Research output: Contribution to journal › Article › peer-review
Open AccessFile15 Citations (Scopus) -
Consumption of a Recommended Serving of Wheat Bran Cereals Significantly Increases Human Faecal Butyrate Levels in Healthy Volunteers and Reduces Markers of Inflammation
Neacsu, M., Anderson, S., Verschoor, P., Vaughan, N., Horgan, G., Hulshof, T., Duncan, S., Duthie, S. & Russell, W., 2022, In: Recent Progress in Nutrition. 1, 4, 15 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile7 Downloads (Pure) -
2021
Dietary fibre complexity and its influence on functional groups of the human gut microbiota
Louis, P., Solvang, M., Duncan, S., Walker, A. & Mukhopadhya, I., 30 Nov 2021, In: Proceedings of the Nutrition Society. 80, 4, p. 386–397 12 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile11 Citations (Scopus)20 Downloads (Pure) -
Description of Ruminococcoides bili gen. nov., sp. nov., a bile resistant bacterium from human bile with autolytic behavior.
Molinero, N., Conti, E., Sánchez, B., Walker, A. W., Margolles, A., Duncan, S. H. & Delgado, S., Aug 2021, In: International Journal of Systematic and Evolutionary Microbiology. 71, 8, 11 p., 004960.Research output: Contribution to journal › Article › peer-review
8 Citations (Scopus) -
Human gut Faecalibacterium prausnitzii deploy a highly efficient conserved system to cross-feed on β-mannan-derived oligosaccharides
Lindstad, L. J., Lo, G., Leivers, S., Lu, Z., Michalak, L., Pereira, G. V., Røhr, Å. K., Martens, E. C., McKee, L. S., Louis, P., Duncan, S. H., Westereng, B., Pope, P. B. & La Rosa, S. L., 1 Jun 2021, In: mBio. 12, 3, 18 p., e03628-20.Research output: Contribution to journal › Article › peer-review
Open AccessFile30 Citations (Scopus)2 Downloads (Pure) -
Impact of protein on the composition and metabolism of the human gut microbiota and health
Duncan, S., Iyer, A. B. & Russell, W., May 2021, In: Proceedings of the Nutrition Society. 80, 2, p. 173 - 185 14 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile19 Citations (Scopus)13 Downloads (Pure) -
Type IV pili are widespread among non-pathogenic Gram-positive gut bacteria with diverse carbohydrate utilization patterns
Rozman, V., Accetto, T., Duncan, S. H., Flint, H. J. & Vodovnik, M., 26 Mar 2021, In: Environmental Microbiology. 23, 3, p. 1527-1540 14 p.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
Microbiota-directed food formulation
Russell, W., Neacsu, M. & Duncan, S., 18 Mar 2021, In: Food Science & Technology. 35, 1, p. 26-27 2 p.Research output: Contribution to journal › Article › peer-review
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2020
Relative abundance of the Prevotella genus within the human gut microbiota of elderly volunteers determines the inter-individual responses to dietary supplementation with wheat bran arabinoxylan-oligosaccharides
Chung, W. S. F., Walker, A., Bosscher, D., Garcia-Campayo, V., Wagner, J., Parkhill, J., Duncan, S. & Flint, H. J., 14 Sept 2020, In: BioMed Central Microbiology. 20, 14 p., 283.Research output: Contribution to journal › Article › peer-review
Open AccessFile41 Citations (Scopus)2 Downloads (Pure) -
Pivotal roles for pH, lactate and lactate-utilizing bacteria in the stability of a human colonic microbial ecosystem
Wang, S. P., Rubio, L. A., Duncan, S. H., Donachie, G. E., Holtrop, G., Lo, G., Farquharson, F. M., Wagner, J., Parkhill, J., Louis, P., Walker, A. & Flint, H. J., 8 Sept 2020, In: mSystems. 5, 5, 18 p., e00645-20.Research output: Contribution to journal › Article › peer-review
Open AccessFile64 Citations (Scopus)7 Downloads (Pure) -
Comparative genetic and physiological characterisation of Pectinatus species reveals shared tolerance to beer-associated stressors but halotolerance specific to pickle-associated strains
Kramer, T., Kelleher, P., Meer, J. V. D., O'Sullivan, T., Geertman, J-M. A., Duncan, S. H., Flint, H. J. & Louis, P., Sept 2020, In: Food Microbiology. 90, 12 p., 103462.Research output: Contribution to journal › Article › peer-review
Open AccessFile5 Citations (Scopus)2 Downloads (Pure) -
Vitamin biosynthesis by human gut butyrate-producing bacteria and cross-feeding in synthetic microbial communities
Soto Martin, E., Warnke, I., Farquharson, F., Christodoulou, M., Horgan, G., Derrien, M., Faurie, J-M., Flint, H. J., Duncan, S. & Louis, P., Jul 2020, In: mBio. 11, 4, 18 p., e00886-20.Research output: Contribution to journal › Article › peer-review
Open AccessFile101 Citations (Scopus)21 Downloads (Pure) -
Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations
Karcher, N., Pasolli, E., Asnicar, F., Huang, K. D., Tett, A., Manara, S., Armanini, F., Bain, D., Duncan, S. H., Louis, P., Zolfo, M., Manghi, P., Valles-Colomer, M., Raffaetà, R., Rota-Stabelli, O., Collado, M. C., Zeller, G., Falush, D., Maixner, F., Walker, A. W., & 2 others, 8 Jun 2020, In: Genome Biology. 21, 27 p., 138.Research output: Contribution to journal › Article › peer-review
Open AccessFile55 Citations (Scopus)8 Downloads (Pure) -
Evaluation of bacterial biomarkers to aid in challenging inflammatory bowel diseases diagnostics and subtype classification
Lopez-Siles, M., Aldeguer, X., Sabat-Mir, M., Serra-Pagès, M., Duncan, S. H., Flint, H. J., Garcia-Gil, L. J. & Martinez-Medina, M., 12 May 2020, In: World Journal of Gastrointestinal Pathophysiology. 11, 3, p. 64-77 14 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile11 Downloads (Pure) -
Sapogenol is a major microbial metabolite in human plasma associated with high protein soy-based diets: the relevance for functional food formulations
Neacsu, M., Raikos, V., Benavidez-Paz, Y., Duncan, S. H., Duncan, G. J., Christie, J., Johnstone, A. M. & Russell, W. R., 3 Apr 2020, In: Foods. 9, 4, 422.Research output: Contribution to journal › Article › peer-review
Open AccessFile16 Citations (Scopus)6 Downloads (Pure) -
2019
Flintibacter
Louis, P., Lo, G., Kramer, T. & Duncan, S., Oct 2019, Bergey’s Manual of Systematics of Archaea and Bacteria. WileyResearch output: Chapter in Book/Report/Conference proceeding › Entry for encyclopedia/dictionary
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Impact of carbohydrate substrate complexity on the diversity of the human colonic microbiota
Chung, W. S. F., Walker, A. W., Vermeiren, J., Sheridan, P. O., Bosscher, D., Garcia-Campayo, V., Parkhill, J., Flint, H. J. & Duncan, S. H., 1 Jan 2019, In: FEMS Microbiology Ecology. 95, 1, fiy201.Research output: Contribution to journal › Article › peer-review
Open AccessFile36 Citations (Scopus)9 Downloads (Pure) -
Formate cross-feeding and cooperative metabolic interactions revealed by transcriptomics in co-cultures of acetogenic and amylolytic human colonic bacteria
Laverde Gomez, J. A., Mukhopadhya, I., Duncan, S. H., Louis, P., Shaw, S., Collie-Duguid, E., Crost, E., Juge, N. & Flint, H. J., Jan 2019, In: Environmental Microbiology. 21, 1, p. 259-271 13 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile50 Citations (Scopus)11 Downloads (Pure) -
2018
Alterations in the abundance and co-occurrence of Akkermansia muciniphila and Faecalibacterium prausnitzii in the colonic mucosa of inflammatory bowel disease subjects
Lopez-Siles, M., Enrich-Capó, N., Aldeguer, X., Sabat-Mir, M., Duncan, S., Garcia-Gil, J. & Martinez-Medina, M., 7 Sept 2018, In: Frontiers in cellular and infection microbiology. 8, 16 p., 281.Research output: Contribution to journal › Article › peer-review
Open AccessFile125 Citations (Scopus)12 Downloads (Pure) -
Mutual Interaction of Phenolic Compounds and Microbiota: Metabolism of Complex Phenolic Apigenin-C- and Kaempferol-O-Derivatives by Human Fecal Samples
Vollmer, M., Esders, S., Farquharson, F. M., Neugart, S., Duncan, S., Schreiner, M., Louis, P., Maul, R. & Rohn, S., 17 Jan 2018, In: Journal of Agricultural and Food Chemistry. 66, 2, p. 485–497 13 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile41 Citations (Scopus)10 Downloads (Pure) -
Sporulation capability and amylosome conservation among diverse human colonic and rumen isolates of the keystone starch-degrader Ruminococcus bromii
Mukhopadhya, I., Morais, S., Laverde-Gomez, J., Sheridan, P. O., Walker, A. W., Kelly, W., Klieve, A. V., Ouwerkerk, D., Duncan, S. H., Louis, P., Koropatkin, N., Cockburn, D., Kibler, R., Cooper, P. J., Sandoval, C., Crost, E., Juge, N., Bayer, E. A. & Flint, H. J., Jan 2018, In: Environmental Microbiology. 20, p. 324-336 13 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile65 Citations (Scopus)18 Downloads (Pure) -
Specific substrate-driven changes in human faecal microbiota composition contrast with functional redundancy in short-chain fatty acid production
Reichardt, N., Vollmer, M., Holtrop, G., Farquharson, F. M., Wefers, D., Bunzel, M., Duncan, S. H., Drew, J. E., Williams, L. M., Milligan, G., Preston, T., Morrison, D., Flint, H. J. & Louis, P., 2018, In: The ISME Journal. 12, p. 610-622 13 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile147 Citations (Scopus)24 Downloads (Pure) -
2017
Prebiotic potential of pectin and pectic oligosaccharides to promote anti-inflammatory commensal bacteria in the human colon
Chung, W. S. F., Meijerink, M., Zeuner, B., Holck, J., Louis, P., Meyer, A. S., Wells, J. M., Flint, H. J. & Duncan, S. H., 1 Nov 2017, In: FEMS Microbiology Ecology. 93, 11, p. 1-9 9 p., fix127.Research output: Contribution to journal › Article › peer-review
Open AccessFile203 Citations (Scopus)15 Downloads (Pure) -
Circulating and Tissue-resident CD4+ T Cells With Reactivity to Intestinal Microbiota Are Abundant in Healthy Individuals and Function is Altered During Inflammation
Hegazy, A. N., West, N. R., Stubbington, M. J. T., Wendt, E., Suijker, K. I. M., Datsi, A., This, S., Danne, C., Campion, S., Duncan, S. H., Owens, B. M. J., Uhlig, H. H., McMichael, A., Oxford IBD Cohort Investigators, Bergthaler, A., Teichmann, S. A., Keshav, S. & Powrie, F., Nov 2017, In: Gastroenterology. 153, 5, p. 1320-1337 18 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile228 Citations (Scopus)55 Downloads (Pure) -
Chlorogenic acid versus amaranth's caffeoylisocitric acid – Gut microbial degradation of caffeic acid derivatives
Vollmer, M., Schröter, D., Esders, S., Neugart, S., Farquharson, F. M., Duncan, S. H., Schreiner, M., Louis, P., Maul, R. & Rohn, S., Oct 2017, In: Food Research International. 100, 3, p. 375-384 10 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile27 Citations (Scopus)8 Downloads (Pure) -
Discovery of a novel lantibiotic nisin O from Blautia obeum A2-162, isolated from the human 2 gastrointestinal tract
Hatziioanou, D., Gherghisan-Filip, C., Saalbach, G., Horn, N., Wegmann, U., Duncan, S. H., Flint, H. J., Mayer, M. J. & Narbad, A., 1 Sept 2017, In: Microbiology . 163, 9, p. 1292-1305 14 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile71 Citations (Scopus)11 Downloads (Pure) -
The impact of nutrition on intestinal bacterial communities
Flint, H. J., Duncan, S. H. & Louis, P., Aug 2017, In: Current Opinion in Microbiology. 38, p. 59-65 7 p.Research output: Contribution to journal › Literature review › peer-review
101 Citations (Scopus) -
Faecalibacterium prausnitzii: from microbiology to diagnostics and prognostics
Lopez-Siles, M., Duncan, S. H., Garcia-Gil, L. J. & Martinez-Medina, M., Apr 2017, In: The ISME Journal. 11, 4, p. 841-852 12 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile454 Citations (Scopus)14 Downloads (Pure) -
Availability and dose response of phytophenols from a wheat bran-rich cereal product in healthy human volunteers
Neacsu, M., McMonagle, J., Fletcher, R. J., Hulshof, T., Duncan, S. H., Scobbie, L., Duncan, G. J., Cantlay, L., Horgan, G., De Roos, B., Duthie, G. G. & Russell, W. R., 1 Mar 2017, In: Molecular Nutrition & Food Research. 61, 3, p. 1-15 15 p., 1600202.Research output: Contribution to journal › Article › peer-review
Open AccessFile24 Citations (Scopus)20 Downloads (Pure) -
2016
Lysozyme activity of the Ruminococcus champanellensis cellulosome
Moraïs, S., Cockburn, D. W., Ben-David, Y., Koropatkin, N. M., Martens, E. C., Duncan, S. H., Flint, H. J., Mizrahi, I. & Bayer, E. A., Dec 2016, In: Environmental Microbiology. 18, 12, p. 5112–5122 11 p.Research output: Contribution to journal › Article › peer-review
19 Citations (Scopus) -
Oral treatment with Eubacterium hallii improves insulin sensitivity in db/db mice
Udayappan, S., Manneras-Holm, L., Chaplin-Scott, A., Belzer, C., Herrema, H., Dallinga-Thie, G. M., Stroes, E. S. G., Groen, A. K., Flint, H. J., Backhed, F., de Vos, W. M., Nieuwdorp, M. & Duncan, S. H., 6 Jul 2016, In: NPJ biofilms and microbiomes. 2, 16009.Research output: Contribution to journal › Article › peer-review
Open AccessFile157 Citations (Scopus)7 Downloads (Pure) -
Wheat bran promotes enrichment within the human colonic microbiota of butyrate-producing bacteria that release ferulic acid
Duncan, S. H., Russell, W. R., Quartieri, A., Rossi, M., Parkhill, J., Walker, A. W. & Flint, H. J., Jul 2016, In: Environmental Microbiology. 18, 7, p. 2214-2225 12 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile113 Citations (Scopus)9 Downloads (Pure) -
Objections to the proposed reclassification of Eubacterium rectale as Agathobacter rectalis
Sheridan, P. O., Duncan, S. H., Walker, A. W., Scott, K. P., Louis, P. & Flint, H. J., May 2016, In: International Journal of Systematic and Evolutionary Microbiology. 66, 5, p. 2106-2106 1 p.Research output: Contribution to journal › Letter
7 Citations (Scopus) -
Polysaccharide utilization loci and nutritional specialization in a dominant group of butyrate-producing human colonic Firmicutes
Sheridan, P., Martin, J. C., Lawley, T. D., Browne, H. P., Harris, H. M. B., Bernalier-Donadille, A., Duncan, S. H., O'Toole, P. W., Scott, K. P. & Flint, H. J., 9 Feb 2016, In: Microbial Genomics. 2, 2, 16 p., 43.Research output: Contribution to journal › Article › peer-review
Open AccessFile180 Citations (Scopus)13 Downloads (Pure) -
Enzymatic profiling of cellulosomal enzymes from the human gut bacterium, Ruminococcus champanellensis, reveals a fine-tuned system for cohesin-dockerin recognition
Morais, S., David, Y. B., Bensoussan, L., Duncan, S. H., Koropatkin, N. M., Martens, E. C., Flint, H. J. & Bayer, E. A., Feb 2016, In: Environmental Microbiology. 18, 2, p. 542-556 15 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile50 Citations (Scopus)8 Downloads (Pure) -
Modulation of the human gut microbiota by dietary fibres occurs at the species level
Chung, W. S. F., Walker, A. W., Louis, P., Parkhill, J., Vermeiren, J., Bosscher, D., Duncan, S. H. & Flint, H. J., 11 Jan 2016, In: BMC Biology. 14, 3.Research output: Contribution to journal › Article › peer-review
Open AccessFile277 Citations (Scopus)10 Downloads (Pure) -
Changes in the Abundance of Faecalibacterium prausnitzii Phylogroups I and II in the Intestinal Mucosa of Inflammatory Bowel Disease and Patients with Colorectal Cancer
Lopez-Siles, M., Martinez-Medina, M., Surís-Valls, R., Aldeguer, X., Sabat-Mir, M., Duncan, S. H., Flint, H. J. & Garcia-Gil, L. J., Jan 2016, In: Inflammatory Bowel Diseases. 22, 1, p. 28-41 14 p.Research output: Contribution to journal › Article › peer-review
94 Citations (Scopus) -
Faecalibacterium prausnitzii A2-165 has a high capacity to induce IL-10 in human and murine dendritic cells and modulates T cell responses
Rossi, O., van Berkel, L. A., Chain, F., Tanweer Khan, M., Taverne, N., Sokol, H., Duncan, S. H., Flint, H. J., Harmsen, H. J. M., Langella, P., Samsom, J. N. & Wells, J. M., Jan 2016, In: Scientific Reports. 6, p. 1-12 12 p., 18507.Research output: Contribution to journal › Article › peer-review
Open AccessFile150 Citations (Scopus)8 Downloads (Pure) -
2015
Enhanced butyrate formation by cross-feeding between Faecalibacterium prausnitzii and Bifidobacterium adolescentis
Rios-Covian, D., Gueimonde, M., Duncan, S. H., Flint, H. J. & de Los Reyes-Gavilan, C. G., Nov 2015, In: FEMS Microbiology Letters. 362, 21, 7 p., fnv176.Research output: Contribution to journal › Article › peer-review
237 Citations (Scopus)