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A max-plus model of ribosome dynamics during mRNA translation

Brackley, C. A., Broomhead, D. S., Romano, M. C. & Thiel, M., 21 Jun 2012, In : Journal of Theoretical Biology. 303, -, p. 128-140 13 p.

Research output: Contribution to journalArticle

26 Citations (Scopus)
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8 Citations (Scopus)
6 Downloads (Pure)

Analysis of high-resolution microelectrode EEG recordings in an animal model of spontaneous limbic seizures

Komalapriya, C., Romano, M. C., Thiel, M., Schwarz, U., Kurths, J., Simonotto, J., Furman, M., Ditto, W. L. & Carney, P. R., Feb 2009, In : International Journal of Bifurcation and Chaos. 19, 2, p. 605–617 13 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Analytical description of recurrence plots of dynamical systems with nontrivial recurrences

Zou, Y., Thiel, M., Romano, M. C. & Kurths, J., Dec 2007, In : International Journal of Bifurcation and Chaos. 17, 12, p. 4273-4283 11 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)

An automated algorithm for the generation of dynamically reconstructed trajectories

Komalapriya, C., Romano, M. C., Thiel, M., Marwan, N., Kurths, J., Kiss, I. Z. & Hudson, J. L., Mar 2010, In : Chaos. 20, 1, 9 p., 013107.

Research output: Contribution to journalArticle

3 Citations (Scopus)

A systems biology analysis of long and short-term memories of osmotic stress adaptation in fungi

You, T., Ingram, P., Jacobsen, M. D., Cook, E., McDonagh, A., Thorne, T., Lenardon, M. D., de Moura, A. P. S., Romano, M. C., Thiel, M., Stumpf, M., Gow, N. A. R., Haynes, K., Grebogi, C., Stark, J. & Brown, A. J. P., 25 May 2012, In : BMC Research Notes. 5, 16 p., 258.

Research output: Contribution to journalArticle

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18 Citations (Scopus)
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A yeast tRNA mutant that causes pseudohyphal growth exhibits reduced rates of CAG codon translation

Kemp, A., Betney, R., Ciandrini, L., Schwenger, A. C., Romano, M. C. & Stansfield, I., Jan 2013, In : Molecular Microbiology. 87, 2, p. 284–300 27 p.

Research output: Contribution to journalArticle

25 Citations (Scopus)

Characterization of stickiness by means of recurrence

Zou, Y., Thiel, M., Romano, M. C. & Kurths, J., 12 Oct 2007, In : Chaos. 17, 4, 8 p., 043101.

Research output: Contribution to journalArticle

17 Citations (Scopus)

Combinatorial stresses kill pathogenic Candida species

Kaloriti, D., Tillmann, A., Cook, E., Jacobsen, M., You, T., Lenardon, M., Ames, L., Barahona, M., Chandrasekaran, K., Coghill, G., Goodman, D., Gow, N. A. R., Grebogi, C., Ho, H-L., Ingram, P., McDonagh, A., de Moura, A. P. S., Pang, W., Puttnam, M., Radmaneshfar, E. & 10 others, Romano, M. C., Silk, D., Stark, J., Stumpf, M., Thiel, M., Thorne, T., Usher, J., Yin, Z., Haynes, K. & Brown, A. J. P., Oct 2012, In : Medical Mycology. 50, 7, p. 699-709 11 p.

Research output: Contribution to journalArticle

56 Citations (Scopus)

Conceptual Model for Runoff from a Forested Catchment

Romano, M. C., Thiel, M., Schwarz, U., Kurths, J., Lange, H. & Hauhs, M., 2001, In : International Journal of Bifurcation and Chaos. 11, p. 2567

Research output: Contribution to journalArticle

1 Citation (Scopus)

Continuous wavelet transform in the analysis of burst synchronization in a coupled laser system

Bergner, A., Meucci, R., Al Naimee, K., Romano, M. C., Thiel, M., Kurths, J. & Arecchi, F. T., 25 Jul 2008, In : Physical Review. E, Statistical, Nonlinear and Soft Matter Physics. 78, 1, 7 p., 016211.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Controlling translation elongation efficiency: tRNA regulation of ribosome flux on the mRNA

Gorgoni, B., Marshall, E., McFarland, M. R., Romano, M. C. & Stansfield, I., Feb 2014, In : Biochemical Society Transactions. 42, 1, p. 160-165 6 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Deciphering mRNA Sequence Determinants of Protein Production Rate

Szavits-Nossan, J., Ciandrini, L. & Romano, M. C., 23 Mar 2018, In : Physical Review Letters. 120, 12, 128101.

Research output: Contribution to journalArticle

Open Access
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8 Citations (Scopus)
5 Downloads (Pure)

Definition Of The Minimal Contents For The Molecular Simulation Of The Yeast Cytoplasm

Kompella, V. P. S., Stansfield, I., Romano, M. C. & Mancera, R. L., Oct 2019, In : Frontiers in Molecular Biosciences. 6, 9 p., 97.

Research output: Contribution to journalArticle

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Detection of Synchronization for Non-Phase Coherent and Non-stationary Data

Romano, M. C., Thiel, M., Kurths, J., Kiss, I. Z. & Hudson, J. L., 2005, In : Europhysics Letters. 71, 3, p. 466-472 7 p.

Research output: Contribution to journalArticle

130 Citations (Scopus)

Distinguishing Direct from Indirect Interactions in Oscillatory Networks with Multiple Time Scales

Nawrath, J., Romano, M. C., Thiel, M., Kiss, I. Z., Wickramasinghe, M., Timmer, J., Kurths, J. & Schelter, B., 22 Jan 2010, In : Physical Review Letters. 104, 3, 4 p., 038701.

Research output: Contribution to journalArticle

Open Access
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55 Citations (Scopus)
10 Downloads (Pure)

Estimation of dynamical invariants without embedding by recurrence plots

Thiel, M., Romano, M. C., Kurths, J. & Read, P., Jun 2004, In : Chaos. 14, 2, p. 234-243 10 p.

Research output: Contribution to journalArticle

131 Citations (Scopus)
91 Citations (Scopus)

From START to FINISH: the influence of osmotic stress on the cell cycle

Radmaneshfar, E., Kaloriti, D., Gustin, M. C., Gow, N. A. R., Brown, A. J. P., Grebogi, C., Romano, M. C. & Thiel, M., 10 Jul 2013, In : PloS ONE. 8, 7, 14 p., e68067.

Research output: Contribution to journalArticle

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12 Citations (Scopus)
6 Downloads (Pure)

Generating surrogates from recurrences

Thiel, M., Romano, M. C., Kurths, J., Rolfs, M. & Kliegl, R., 28 Feb 2008, In : Philosophical Transactions of the Royal Society A: Mathematical, Physical & Engineering Sciences. 366, 1865, p. 545-557 13 p.

Research output: Contribution to journalArticle

24 Citations (Scopus)

How much information is contained in a Recurrence Plot?

Thiel, M., Romano, M. C. & Kurths, J., Sep 2004, In : Physics Letters A. 330, 5, p. 343-349 6 p.

Research output: Contribution to journalArticle

102 Citations (Scopus)

Hypothesis test for synchronization: Twin surrogates revisited

Romano, M. C., Thiel, M., Kurths, J., Mergenthaler, K. & Engbert, R., 31 Mar 2009, In : Chaos. 19, 1, 14 p., 015108.

Research output: Contribution to journalArticle

21 Citations (Scopus)

Identification of the mRNA targets of tRNA-specific regulation using genome-wide simulation of translation

Gorgoni, B., Ciandrini, L., McFarland, M. R., Romano, M. C. & Stansfield, I., 2 Nov 2016, In : Nucleic Acids Research. 44, 19, p. 9231-9244 14 p.

Research output: Contribution to journalArticle

Open Access
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8 Citations (Scopus)
9 Downloads (Pure)

Inferring direct coupling by means of recurrences

Zou, Y., Romano, M. C., Thiel, M., Marwan, N. & Kurths, J., Apr 2011, In : International Journal of Bifurcation and Chaos. 21, 4, p. 1099-1111 13 p.

Research output: Contribution to journalArticle

27 Citations (Scopus)

Influence of observational noise on the recurrence quantification analysis

Thiel, M., Romano, M. C., Kurths, J., Meucci, R., Allaria, E. & Arecchi, F. T., 2002, In : Physica. D, Nonlinear Phenomena. 171, p. 138

Research output: Contribution to journalArticle

163 Citations (Scopus)

Influence of paced maternal breathing on fetal–maternal heart rate coordination

Van Leeuwen, P., Geue, D., Thiel, M., Cysarz, D., Lange, S., Romano, M. C., Wessel, N., Kurths, J. & Groenemeyer, D. H., 18 Aug 2009, In : PNAS. 106, 33, p. 13661-13666 6 p.

Research output: Contribution to journalArticle

74 Citations (Scopus)

Integrative Model of Oxidative Stress Adaptation in the Fungal Pathogen Candida albicans

Chandrasekaran, K., Kaloriti, D., Tillmann, A. T., Yin, Z., Herrero De Dios, C., Jacobsen, M. D., Belmonte, R. C., Cameron, G., Haynes, K., Grebogi, C., de Moura, A. P. S., Gow, N. A. R., Thiel, M., Quinn, J., Brown, A. J. P. & Romano, M. C., 14 Sep 2015, In : PloS ONE. 10, 9, 0137750.

Research output: Contribution to journalArticle

Open Access
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24 Citations (Scopus)
8 Downloads (Pure)

Introduction to Focus Issue: Dynamics in Systems Biology

Brackley, C. A., Ebenhoeh, O., Grebogi, C., Kurths, J., de Moura, A., Romano, M. C. & Thiel, M., Dec 2010, In : Chaos. 20, 4, 3 p., 045101.

Research output: Contribution to journalArticle

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8 Citations (Scopus)
7 Downloads (Pure)

Limited resources in a driven diffusion process

Brackley, C. A., Romano, M. C., Grebogi, C. & Thiel, M., 13 Aug 2010, In : Physical Review Letters. 105, 7, 4 p., 078102.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Minimal model of transcriptional elongation processes with pauses

Wang, J., Pfeuty, B., Thommen, Q., Romano Blasco, M. C. & Lefranc, M., 11 Nov 2014, In : Physical Review. E, Statistical, Nonlinear and Soft Matter Physics. 90, 5, p. 1-4 4 p., 050701.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Mixed population of competing totally asymmetric simple exclusion processes with a shared reservoir of particles

Greulich, P., Ciandrini, L., Allen, R. & Romano, M. C., 27 Jan 2012, In : Physical Review. E, Statistical, Nonlinear and Soft Matter Physics. 85, 1, 11 p., 011142.

Research output: Contribution to journalArticle

41 Citations (Scopus)

Multiple phase transitions in a system of exclusion processes with limited reservoirs of particles and fuel carriers

Brackley, C., Ciandrini, L. & Romano, M. C., 6 Mar 2012, In : Journal of statistical mechanics-Theory and experiment. 2012, 3, 23 p., P03002 .

Research output: Contribution to journalArticle

8 Citations (Scopus)

Multivariate Recurrence Plots

Romano, M. C., Thiel, M., Kurths, J. & von Bloh, W., Sep 2004, In : Physics Letters A. 330, 3-4, p. 214-223 10 p.

Research output: Contribution to journalArticle

93 Citations (Scopus)

Novel mRNA-specific effects of ribosome drop-off on translation rate and polysome profile

Bonnin, P., Kern, N., Young, N. T., Stansfield, I. & Romano, M. C., May 2017, In : PLoS Computational Biology . 13, 5, e1005555.

Research output: Contribution to journalArticle

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8 Citations (Scopus)
7 Downloads (Pure)

Power series solution of the inhomogeneous exclusion process

Szavits-Nossan, J., Romano, M. C. & Ciandrini, L., 29 May 2018, In : Physical Review. E, Statistical, Nonlinear and Soft Matter Physics. 97, 5, 13 p., 052139.

Research output: Contribution to journalArticle

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4 Citations (Scopus)
5 Downloads (Pure)

Queueing phase transition: Theory of Translation

Romano, M. C., Thiel, M., Stansfield, I. & Grebogi, C., 15 May 2009, In : Physical Review Letters. 102, 19, 4 p., 198104.

Research output: Contribution to journalArticle

36 Citations (Scopus)

Reconstruction of a system's dynamics from short trajectories

Komalapriya, C., Thiel, M., Romano, M. C., Marwan, N., Schwarz, U. & Kurths, J., 24 Dec 2008, In : Physical Review. E, Statistical, Nonlinear and Soft Matter Physics. 78, 6, 11 p., 066217.

Research output: Contribution to journalArticle

15 Citations (Scopus)

Recurrence analysis of strange nonchaotic dynamics

Ngamga, E. J., Nandi, A., Ramaswamy, R., Romano, M. C., Thiel, M. & Kurths, J., 29 Mar 2007, In : Physical Review. E, Statistical, Nonlinear and Soft Matter Physics. 75, 3, 8 p., 036222.

Research output: Contribution to journalArticle

28 Citations (Scopus)

Recurrence plot analyses suggests a novel reference system in newborn spontaneous movements

Aszmann, B., Thiel, M., Romano, M. C. & Niemitz, C., Aug 2006, In : Behavior Research Methods. 38, 3, p. 400-406 7 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Recurrence Plots for the Analysis of Complex Systems

Marwan, N., Romano, M. C., Thiel, M. & Kurths, J., 12 Jan 2007, In : Physics Reports. 438, 5-6, p. 237-329 93 p.

Research output: Contribution to journalArticle

1742 Citations (Scopus)

Ribosome recycling induces optimal translation rate at low ribosomal availability

Marshall, E., Stansfield, I. & Romano, M. C., 6 Sep 2014, In : Journal of the Royal Society Interface. 11, 98, 9 p., 20140589 .

Research output: Contribution to journalArticle

Open Access
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16 Citations (Scopus)
5 Downloads (Pure)
Open Access
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61 Citations (Scopus)
6 Downloads (Pure)
Open Access
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51 Citations (Scopus)
4 Downloads (Pure)

Shrimp Structure and Associated Dynamics in Parametrically Excited Oscillators

Zou, Y., Thiel, M., Romano, M. C., Bi, Q. & Kurths, J., 2006, In : International Journal of Bifurcation and Chaos. 16, 12, p. 3567-3579 13 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)

Slow sites in an exclusion process with limited resources

Brackley, C. A., Romano, M. C. & Thiel, M., Nov 2010, In : Physical Review. E, Statistical, Nonlinear and Soft Matter Physics. 82, 5 Pt 1, 051920.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Spurious Structures in Recurrence Plots Induced by Embedding

Thiel, M., Romano, M. C. & Kurths, J., 2006, In : Nonlinear Dynamics. 44, 1-4, p. 299-305 7 p.

Research output: Contribution to journalArticle

23 Citations (Scopus)

Stability of terrestrial planets in the habitable zone of GI 777 A, HD 72659, GI 614, 47 Uma and HD 4208

Asghari, N., Broeg, C., Carone, L., Casas-Miranda, R., Palacio, J. C. C., Csillik, I., Dvorak, R., Freistetter, F., Hadjivantsides, G., Hussmann, H., Khramova, A., Khristoforova, M., Khromova, I., Kitiashivilli, I., Kozlowski, S., Laaskso, T., Laczkowski, T., Lytvinenko, D., Miloni, O., Morishima, R. & 20 others, Moro-Martin, A., Paksyutov, V., Pal, A., Patidar, V., Pecnik, B., Peles, O., Pyo, J., Quinn, T., Rodriguez, A., Romano, M. C., Saikia, E., Stadel, J., Thiel, M., Todorovic, N., Veras, D., Neto, E. V., Vilagi, J., von Bloh, W., Zechner, R. & Zhuchkova, E., Oct 2004, In : Astronomy & Astrophysics. 426, 1, p. 353-365 13 p.

Research output: Contribution to journalArticle

57 Citations (Scopus)

Stepping and Crowding of Molecular Motors: Statistical Kinetics from an Exclusion Process Perspective

Ciandrini, L., Romano, M. C. & Parmeggiani, A., 2 Sep 2014, In : Biophysical Journal. 107, 5, p. 1176-1184 9 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

Surrogate-based hypothesis test without surrogates

Thiel, M., Romano, M. C., Schwarz, U., Kurths, J. & Timmer, J., Jun 2004, In : International Journal of Bifurcation and Chaos. 14, 6, p. 2107-2114 8 p.

Research output: Contribution to journalArticle

Synthetic biology routes to bio-artificial intelligence

Nesbeth, D. N., Zaikin, A., Saka, Y., Romano, M. C., Giuraniuc, C. V., Kanakov, O. & Laptyeva, T., 30 Nov 2016, In : Essays in Biochemistry. 60, 4, p. 381-391 11 p.

Research output: Contribution to journalArticle

Open Access
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7 Citations (Scopus)
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